Serpentinimonas maccroryi: SMCB_0838
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Entry
SMCB_0838 CDS
T03627
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase, sigma subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
cbab
Serpentinimonas maccroryi
Pathway
cbab02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cbab00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SMCB_0838 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbab03021
]
SMCB_0838 (rpoD)
Transcription machinery [BR:
cbab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SMCB_0838 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r2
Sigma70_r3
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF6522
SPO22
STX6_10_61_N
Motif
Other DBs
NCBI-ProteinID:
BAO83066
UniProt:
A0A060NKP4
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All DBs
Position
complement(874183..876300)
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AA seq
705 aa
AA seq
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MAAPAVKRSRKPKATALPEAIPAAPPIRDEVDLIDLEEEFSADPDAALAADGTADAGEAS
ETVEKAKPLRMKISKAKERALMKEFGLDDTILTEEEAKARRDHLKALIKLGKTRGYLTHG
EINDHLPDKLAEAETLEVVVSLLNDMGVAVYEQTPDAETLLLSNAGPTSATEEEAEEEAE
AALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLNEMMAAISQSPATI
NEILNMAEEVRAGAVVISTFVDGFSDADEADDYVAEEDFDDYDEASDDDGKGGSKAVSRK
MEELKREALARFDALRELFEQLHSSYDQHGYASPAYQQAQAQLTAKLMTIRFTAKAIEKL
CDTVRQQVESVRKKERELRRIIVDKCRMPQDKFVADFPPNLLNRQWVEKQAAAGKPWSAS
MGRHIPPIQELQQQLIDLQTSVVVPLEQLKAIHKRMNDGERMSRNAKKEMIEANLRLVIS
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKMNRLSRQHLQEHGFEPDASMLAEKMEIPEEKIRKIMKIAKEPISMET
PIGDDDDSHLGDFIEDSANTAPIDAAMQAGLREVVKEILDSLTPREAKVLRMRYGIEMST
DHTLEEVGKQFDVTRERIRQIENKAVRKLKHPSRSDKLRSFMDTL
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
gtggcggcaccagcggtcaagcgcagccgcaagcctaaagccacggcgctgcccgaggcc
attccggccgcgccgccgatccgcgacgaagtcgatctgatcgacctcgaagaagagttc
agcgccgatcccgatgccgcgctcgcggctgacggcaccgccgatgcgggtgaggcgtcc
gagacggtcgaaaaggccaagcccttgcgcatgaaaatcagcaaggccaaagagcgcgcc
ctgatgaaagagttcgggctcgacgacaccatcctgaccgaagaagaagccaaggcccgg
cgcgaccacctcaaggccctgatcaagctcggcaagacgcgcggctacctgacgcacggc
gaaatcaacgaccacctgcccgacaagctggccgaggccgaaacgctcgaagtcgtggtg
tcgctgctcaacgacatgggcgtggcggtctatgagcaaacgcccgacgccgaaacgctg
ctgctgtccaacgccggcccgacttcggccaccgaagaagaagccgaagaagaagccgag
gccgcgctctccacggtggacagcgagtttggccgcaccaccgacccggtgcgcatgtac
atgcgcgaaatgggcacggtcgaactgctcacgcgcgagggcgagatcgaaatcgccaag
cgcatcgaaggcggcctcaacgagatgatggccgcgatctcgcagtcgcccgccaccatc
aacgaaatcctgaacatggccgaggaagttcgcgccggtgcggtggtgatctcgaccttt
gtcgatggcttttccgacgccgacgaggccgacgactacgtggccgaagaagacttcgac
gactacgacgaagccagcgacgacgacggcaaaggcggctccaaggcggtgtcgcgcaaa
atggaagagctcaagcgcgaggccttggcgcgcttcgatgccttgcgcgagttgttcgag
cagctgcactccagctacgaccagcacggctacgccagcccggcttatcagcaggcgcaa
gcgcaattaaccgccaagctgatgaccatccgcttcaccgccaaagcgatcgaaaagctg
tgcgacacggtgcgccagcaagtcgagtcggtgcgcaagaaagagcgcgaactgcgccgc
atcatcgtggacaaatgccgcatgccacaagacaagtttgtggccgacttcccgcccaac
ctgctcaaccgccagtgggtcgaaaagcaggccgctgccggcaagccgtggagcgccagc
atggggcgccacattccgccgatccaggaactgcagcagcagctcatcgacctgcagacc
agcgtggtggtgccgctggagcagctcaaagccatccacaagcgcatgaacgacggcgag
cgcatgtcgcgcaacgccaaaaaagagatgatcgaggccaacctgcgcttggtcatcagc
atcgccaaaaaatacaccaaccgcggcctgcagttcctcgacctgatccaagagggcaac
atcggcctgatgaaggcggtggacaagttcgaataccggcgcggctacaagttttccacc
tacgccacttggtggatccggcaagcgatcacgcgctcgatcgccgatcaggcgcgcacc
atccgcatcccggtgcacatgatcgagaccatcaacaagatgaaccgcctcagccgccag
cacctgcaggagcacggcttcgagcccgacgcctcgatgctggccgagaagatggaaatc
cccgaggaaaaaatccgcaagatcatgaagatcgccaaagagccgatcagcatggaaacc
ccgatcggcgacgacgacgattcgcacttgggcgacttcatcgaagacagcgccaacacc
gcgccgatcgacgccgccatgcaagccggcttgcgcgaagtggtcaaagaaatcctcgac
tccctgaccccgcgcgaggccaaggtgctgcgcatgcgctacggcatcgagatgtccacc
gaccacacgctcgaagaagtgggcaagcagttcgacgtcacgcgcgagcgcatccgccag
atcgaaaacaaggcggtgcgcaaactcaagcaccccagccgctccgacaagctgcgcagc
ttcatggacacgctctaa
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