Serpentinimonas maccroryi: SMCB_0972
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Entry
SMCB_0972 CDS
T03627
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbab
Serpentinimonas maccroryi
Pathway
cbab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMCB_0972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbab03019
]
SMCB_0972
Enzymes [BR:
cbab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMCB_0972
Messenger RNA biogenesis [BR:
cbab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMCB_0972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAO83200
UniProt:
A0A060NP92
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All DBs
Position
1024375..1026207
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AA seq
610 aa
AA seq
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MTFDELNLVPALLDAVREQGYTQPTPVQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPLL
QRLHGGPKGSEGQAAQAPHDAPPKRGQSRPIRALVLTPTRELAAQVEESVRVYGKHLHLK
STVIFGGVGMNPQIDKLARGVDVLVATPGRLLDLVDQGRLDLSKVEILVLDEADRMLDMG
FIHDVKKILRLLPAAKQSLLFSATFSDEIRELANGLLRNPQHIQVTPPNTTVQRIVQTIH
PVGRGKKKALLAHIIKEHDWSQVLVFTRTKFGANNVADYLNAHGIGAMALHGNKSQSART
QALADFKSGSIRALVATDIAARGIDIDDLPHVVNYDIPNVCEDYVHRIGRTGRAGAEGAA
VSLVSLDEEGFMMAIEKFTKQQIAVQAFPEFMPEADEKAEPIAMGRQTLWGGAGKPPGRE
VMAAAGRAARKEMTDRVRDSKGGSGRNAKPAHPRAGAHPARPAPQRAAAAPVVRDDDYDD
DAPPPRHADPLAPARPANAAGRRRNPRPNGGGGGGGFGPSSGPRSQAPGSGPRQGAGQGP
ARNRGTGSAGPTGGPGGPARQPDPLRTGIDALGQRGGGGGNRSRSGAGGGGGGGGQGGID
PLRTRFGRIK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgatgaactgaacctggtcccggcactgctggacgccgtgcgcgagcaaggc
tacacccaacccactccggtgcaggcgcaagccataccgctggtgctggccggacacgat
ttgctcgccggcgcccagaccggcaccggcaaaaccgccgccttcacgctgccgctgctg
cagcgcctgcacggcggccccaagggcagcgaaggccaagcggcccaagctccccatgat
gccccccccaagcgcggccagtcgcgccccatccgcgccctggtgctcacccccacgcgc
gagctcgcggcgcaggtggaagaatcggtgcgcgtctatggcaagcacctgcacctgaaa
tcgaccgtgatttttggcggcgtgggcatgaacccgcagatcgacaagctggcccgcggt
gtcgatgtgttggtcgccaccccagggcggctgctcgatttggtggatcaggggcgcttg
gatctgtccaaagtggaaatcctagtgctcgacgaagccgaccgcatgctcgacatgggc
ttcatccacgatgtgaaaaaaatcctgcgcctgctgccagcggcaaaacaaagcctgctg
ttttcggccaccttcagcgacgaaatccgcgaactggccaacggcttgctgcgcaacccc
cagcacattcaggtcacgccgcccaacaccacggtgcagcgcatcgtgcagaccatccac
ccggtggggcgcggcaaaaagaaggcgttgctggcgcacatcatcaaagagcacgactgg
agccaggtgctggtgttcacacgcaccaagtttggcgccaacaacgtggccgactacctc
aatgcccacggcatcggcgccatggcgctgcacggcaacaagagccagagcgcgcgcacc
caggcgctggccgacttcaagagcggcagcatccgcgccctggtggccaccgacatcgcg
gcgcgcggcatcgacatcgacgacttgccgcacgtggtcaactacgacatccccaatgtg
tgcgaagactacgtgcaccgcatcggccgcaccgggcgcgccggtgccgagggcgccgcc
gtgagcctggtgagcctggacgaagaaggcttcatgatggcgatcgagaagttcaccaaa
cagcagatcgcggtgcaggccttccccgagttcatgcccgaagccgacgaaaaagccgaa
cccatcgccatggggcgccaaaccctgtggggcggggccggcaaaccgcccggccgcgaa
gtgatggccgccgccggccgcgcagcgcgcaaagaaatgaccgaccgcgtacgcgacagc
aaaggcgggagcgggcgcaatgccaagcccgcgcatccgcgcgccggcgcccacccggcg
cggcccgcaccgcagcgcgcagcggccgcgcccgtggtccgcgacgacgactacgatgac
gacgccccaccaccgcgccacgccgaccccttggccccagcgcggccggccaacgccgcc
gggcggcgccgcaacccgcgccccaatggcggcggaggcggcggcggcttcggcccctcc
tccggcccccgcagccaagcccccggcagcgggccacgccaaggcgcaggccaaggcccg
gcgcgcaaccgcggtaccggcagcgcgggcccgaccggcggccccggcggcccggcgcgc
cagcccgacccgctgcgcaccggcatcgacgcgctgggccagcgcggcggcggtggcggc
aaccgctcacgcagcggcgctggtggtggcggcggtggtggtggccaaggcggcatcgac
ccgctgcgcacccgttttggccgcatcaaataa
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