Serpentinimonas maccroryi: SMCB_1508
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Entry
SMCB_1508 CDS
T03627
Name
(GenBank) superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbab
Serpentinimonas maccroryi
Pathway
cbab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMCB_1508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbab03019
]
SMCB_1508
Enzymes [BR:
cbab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMCB_1508
Messenger RNA biogenesis [BR:
cbab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMCB_1508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAO83736
UniProt:
A0A060NMH6
LinkDB
All DBs
Position
complement(1634922..1636400)
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AA seq
492 aa
AA seq
DB search
MNPAFSELSLAEPLARAVAELGFTSMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFSLP
LLQRLLKHASASTSPARHPVRALVLLPTRELAVQVAQQIELYAKYTDLRSTVVFGGMDMK
PQTAELKRGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSTEIKRLASSYLQDPVTIEVARSNATAATIEQRFYRIEENDKLQAL
KQVLREREIGQSFVFVNSKLGCARLARTLERDGFVTTALHGDKSQDERLKALEAFKSGAV
QLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGSSGQSFSFVSGRDAKS
LADIEKLLGKKIEIEPLELESDRRRFGGEPGRINDGQRLWHDPRGSSEVRTLRLQRAARP
AADPFFEQPYQPKLAPEAKPEWELQSAKAGTGARTGSPFIRSKRKVAALFKAAVVVESGA
ACEQLPNPEPVS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctgctttttctgaactctcgctggccgagccgctggcccgtgccgtagccgaa
ctcggcttcacatccatgacgccgatccaggcgcaggccattccggtggtgctgcaaggc
cgcgacgtgatgggcgccgcccagaccggcaccggtaaaacggcggccttctccttgccg
ctgctgcagcgcttgctcaagcatgccagcgcctccacgtcgccggcgcggcacccggtg
cgcgcactggtgctgctgcccacgcgcgagctggcggtgcaggtggcgcaacagattgag
ctctacgccaaatacaccgatctgcgcagcacggtggtgtttggtggcatggacatgaag
ccgcaaaccgccgaactcaagcgcggcgtcgaggtgctggtggccacgccggggcggctg
ctggaccacatcgaggccaaaaactgcgtgctcaaccaagtggaatacgtggtgctcgac
gaagccgaccgcatgctcgacatcggctttttacccgacttgcagcgcatcctgtcgtat
ttgcccaagcagcgcaccaccttgttgttctcggccactttctcgaccgaaatcaagcgc
ttggcctcgagctacctgcaagacccggtgaccatcgaggtcgcgcgctccaacgccacc
gctgccaccatcgagcagcgcttttaccgcatcgaagaaaacgacaagctgcaggcgctc
aaacaggtgctgcgcgagcgcgagatcggccaatcgtttgtgttcgtcaacagcaagctc
ggctgtgcccggctggcgcgcacactcgagcgcgacggcttcgtgaccacggcgctgcac
ggcgacaagagccaagacgagcgcctcaaagcgctcgaggccttcaaaagcggcgcggtg
cagctgctggtgtgcaccgatgtggcggcacgcgggctggacatcaaagacgtgccggcg
gtgttcaacttcgacatccccttcaacgccgaagactacgtgcaccgcattggccgcacg
ggtcgtgctgggtcgtctgggcagtctttttcttttgtcagtgggcgcgatgccaagtcg
ctggccgacatcgaaaaactgctcggaaaaaagatcgaaatcgagccgctggagctcgaa
tctgaccggcgccgcttcggtggcgagccgggccgcatcaacgacggccagcgcctctgg
cacgacccgcgtggcagcagcgaggtgcgcaccctgcgcctgcagcgggcagcgcgaccg
gccgccgacccgttctttgagcagccctaccagcccaagctggcacccgaggccaagccc
gagtgggagctgcagtctgccaaggcaggcacgggggcgcgcaccggttcgccgttcatc
cgctccaaacgcaaggtggcggctttgttcaaggctgcggttgtggtcgagtctggcgct
gcatgcgagcaactgcccaatcccgagccggtttcctga
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