Serpentinimonas maccroryi: SMCB_1982
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Entry
SMCB_1982 CDS
T03627
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbab
Serpentinimonas maccroryi
Pathway
cbab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMCB_1982 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbab03021
]
SMCB_1982 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbab03400
]
SMCB_1982 (rpoC)
Enzymes [BR:
cbab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMCB_1982 (rpoC)
Transcription machinery [BR:
cbab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMCB_1982 (rpoC)
DNA repair and recombination proteins [BR:
cbab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMCB_1982 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAO84210
UniProt:
A0A060NS64
LinkDB
All DBs
Position
complement(2133114..2137325)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKHFLDLFKQITPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFAIMSEDDFDAKEREYGDEFVAKM
GAEGIQELLASIDIDGEIERLRNDLTGSELKVKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLKRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKGGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFARLEQMGIATTIKAAKKEVEAGTPVVWDILEEVIREHPVL
LNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSVEAQMEART
LMLSSNNVLFPANGEPSIVPSQDVVLGLYYTTRERINGRGEDMVFADIAEVQRALDAGVV
ELTARVRVSLTEHLKNKEDGQLVPVTKVVQTTVGRALLSEILPRGLPFELINKALKKKEI
SKLINASFRKCGLKETVVFADKLLQNGFRLATRAGISIAIDDMLVPTEKHTIIARAESEV
KEIAQQYSSGLVTAGERYNKVVDIWGKAGDDISKVMMERLKKEKTIDRHGNEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTGNGTLMRAIVEGGEVIESLRDRILG
RTAADDVLNPETQQVVIAAGQIVDEDGCDLIDSLGIDEVRVRTALTCETRFGLCAKCYGR
DLGRGGPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSSGNVGFN
ATMRYVTNSKGELVVIARSGEIVIHDENGLVRERHKVPYGAILAVRADQAIKAGTILANW
DPLTRPIITEFAGTVKFENVHEGMTVAKQVDDVTGLSTLVVIDPKRRGATKVVRPQVKLI
DVSGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGILAEITGTVSFGKETKGKVRLQITDPDGKVAEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVSNPGDSNYIGGEQVERSEILNTNDALMKEGKTPASYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAFHQARHAKERMDDEERRA
IAEADAVALATSLAEADGDSRAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacttcctcgacctgttcaagcagatcacccccgacgagcatttcgatgccatc
aagatcgggctggcctcgcccgagaaaatccgctcctggtcttttggcgaagtcaaaaag
cccgagaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgccaag
atctttggcccgatcaaagactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaggtcacgcagaccaaggtgcggcgcgag
cgcatgggccacatcgacttggccgcgccctgcgcccatatctggttcctcaagagcctg
cccagccgcctcggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctctac
tttgaagcctacgtggtggtcgatccgggcatgacgcccctgaaaaaattcgccatcatg
agcgaagacgacttcgacgccaaagagcgcgagtacggcgacgagttcgtggccaaaatg
ggcgccgagggcatccaagagctgctggccagcatcgacatcgacggcgagatcgagcgc
ctgcgcaacgacctcaccggctccgagctcaaggtcaagaaaaacgccaagcgcctcaag
gtgctggaagccttcaaaaaatcgggcatcaaacccgagtggatggtgctcgacgtgctg
ccggtgctgccgcccgacctgcgcccgctcgttcccctcgacggcggccgctttgccacc
tccgacctcaacgacctgtaccggcgtgtgatcaaccgcaacagccgcctcaagcgcctg
ctcgagctcaaagcgcccgagatcatcgcgcgcaacgaaaagcgcatgctgcaagaggca
gtggacagcctgctcgacaacggccgccgcggcaaggccatgaccggcgccaacaagcgc
gccctcaagtcgctggccgacatgatcaagggcaagggcgggcgcttccgccaaaacttg
ctcggcaagcgggtcgattactcgggccgctcggtcatcaccgtcggccccacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcactcgaattgttcaagcccttcatcttt
gcgcgcctcgagcagatgggcatcgccaccaccatcaaggcggccaaaaaagaagtcgaa
gccggcacgccggtggtctgggacatcctcgaagaggtgatccgcgagcacccggtgctg
ctcaaccgcgccccgacgctgcaccgcctcggcatccaagcctttgagccgctgctgatc
gagggcaaggcgatccagttgcacccgctggtgtgttcggccttcaacgccgacttcgac
ggcgaccaaatggcggtgcacattccgctgtcggtcgaggcgcagatggaagcgcgcacg
ctcatgttgtcgtccaacaacgtgctgttcccggccaacggcgagccctcgatcgtgccc
tcgcaagacgtggtgctgggcctgtactacaccacccgcgagcgcatcaacggccgcggc
gaagacatggtctttgccgacatcgccgaggtgcagcgcgcgctcgacgccggcgtggtc
gagctgacggcgcgcgtcagggtgagcctgacggagcacctgaaaaacaaagaagacggc
cagctggtgccggtcaccaaggtggtgcagaccaccgtgggccgcgccctgctgagcgag
attttgccgcgtggtctgcccttcgagctcatcaacaaggcgctcaagaagaaggaaatc
tccaagctcatcaacgcctcgtttcgcaagtgcggcctcaaagagacggtggtgttcgcc
gacaagctgctgcaaaacggcttcaggttggccacccgcgccggcatctcgatcgccatc
gacgacatgctggtgccgaccgaaaagcacaccatcatcgcccgcgccgagtccgaggtc
aaagagatcgcgcagcagtattcgtcgggtctggtgactgcgggcgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgacatctccaaggtgatgatggagcgcctg
aaaaaggaaaagaccatcgaccgccacggcaacgaggtcgatcaggagtcgttcaactcg
atctatatgatggccgactcgggcgcgcgcggttcggcggcgcagatccgccagctcgcc
ggcatgcgcggcctgatggccaagcccgacggctcgatcatcgaaaccccgatcacggcc
aacttccgcgaaggcctgaacgtgctgcagtacttcatcagcacccacggcgcgcgcaag
gggctggccgacacggcgctgaaaaccgccaactcgggctacctgacgcggcgtttggtt
gacgtgacgcaagacctggtggtgaccgaagacgactgcggcaccggcaacggcaccctg
atgcgcgccatcgtcgagggcggcgaggtgatcgagtcgctgcgcgaccgcattttgggc
cgcacggcggccgacgacgtgctcaaccccgaaacccagcaggtggtgatcgcggccggc
cagatcgtcgatgaagacggctgcgacctgatcgactcgctgggcatcgacgaggtgcgc
gtgcgcacggccctgacctgcgaaacccgctttggcctgtgcgccaagtgctacggccgc
gacctcggccgcggcggcccggtgaacatcggcgaagcggtgggcgtgatcgccgcgcag
tcgatcggcgagccgggtacgcagctcaccatgcgcaccttccacatcggcggcgcggcc
tcgcgcgcggcggtggcgtctagcgtcgaagccaagtccagcggcaacgtcggcttcaac
gccaccatgcgctacgtcaccaactccaagggcgagctggtggtgatcgcgcgctcgggc
gaaatcgtgattcacgacgaaaacgggctggtgcgcgagcgccacaaagtgccctacggg
gcgattctggcggtgcgcgccgaccaggccatcaaggccggcaccatcttggccaactgg
gacccgctcacgcgcccgatcatcaccgagttcgccggcacggtgaagttcgagaacgtg
cacgagggcatgacggtggccaagcaggtcgacgacgtgaccggcctgagcacgctggtg
gtgatcgaccccaaacggcgcggcgccaccaaggtggtgcggccgcaggtcaagctgatc
gacgtcagcggcaacgaggtcaagattccgggcaccgaccactcggtgacgatcggcttc
caggtcggcgccctgattcaggtgcgcgacggccaagacgtgggccccggcgaagtgctg
gcgcgcattcccgttgagggccagaaaacgcgcgacatcaccggcggtctgccgcgggtg
gccgagctgttcgaggcgcgctcgcccaaagacaagggcatcctggccgaaatcaccggc
accgtgagctttggcaaagagaccaaaggcaaggtgcggttgcagatcaccgaccccgac
ggcaaggtggccgaagagctggtgcccaaagagaaaaacatcctggtgcacgaaggccag
gtggtgaacaagggcgaatcgatcgtcgacggcccggccgacccgcaagacatcctgcgc
ctgctgggcatcgaggagctgtcgcgctacatcgtcgacgaggtgcaagacgtctaccgc
ttgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgtcagatgctgcgc
cgcgtggtggtgagcaacccgggcgactcgaactacatcggcggcgagcaggtcgagcgc
tccgagatcctcaacaccaacgacgcgttgatgaaagagggcaaaaccccggcgagctac
agcaacgtgttgctgggcatcaccaaggcctcgctgtcgaccgactcgttcatctccgcc
gcctcgttccaagagaccacacgcgtgctcaccgaagccgcgatcatgggcaagagggac
gagctgcgcggcctgaaagagaacgtgatcgtcgggcgcctgattccggccggcaccggc
atggcctttcaccaggcgcgccacgccaaagagcgcatggacgacgaagagcgtcgcgcc
atcgccgaggccgatgcggtggcgttggccaccagcctggccgaggccgacggcgacagc
cgcgcggagtga
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integrated database retrieval system
