Berryella intestinalis: JI75_01530
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Entry
JI75_01530 CDS
T03545
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbac
Berryella intestinalis
Pathway
cbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI75_01530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbac03019
]
JI75_01530
03400 DNA repair and recombination proteins [BR:
cbac03400
]
JI75_01530
Enzymes [BR:
cbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI75_01530
Messenger RNA biogenesis [BR:
cbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JI75_01530
DNA repair and recombination proteins [BR:
cbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JI75_01530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HRDC
DEAD
RQC
RecQ_Zn_bind
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AJC11564
UniProt:
A0A0A8B2K7
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All DBs
Position
354256..356100
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AA seq
614 aa
AA seq
DB search
MPTIDEARRALKRHFGYDGFRPGQDRIVSALLEGRDCLGVMPTGAGKSVCYQIPAVVLGG
ITIVVSPLVSLMGDQVRSLIEAGVRAAYLNSSLTPGQQDTVLRRAREGSYQIMYVAPERL
SDPRFSAFSRQAEIALFAVDESHCVSQWGQDFRPSYLGIGEFVASLPRRPVFAAFTATAT
QQVRSDIERILGLRDPFTIVTGFDRPNLAFSVEQLGTKRKLDRVAEQVAAHPADSGIVYC
STRKDVDRVCEDLRGRGVSATRYHAGLSNSERTENQRAFVNDDAQVMVATNAFGMGIDKS
NVRYVVHHNMPGSIEAYYQEAGRAGRDGEPSECILLWNDSDIATCRFFVEADSGNERLTP
EEADRVRMTQRRLLASMVGYCTTTQCLRAYILGYFGERSERDRCGNCSNCAGGFSTVDVT
ATARAVMRCVHELRGQYGKGMVADVVTGSRSQKIRTAGLDHCFTYGSVQDSASTVKEVIE
LLASARYLEVSEGKYPLVGLGERFREASEEGFRLEMKRVSAPLPAGRSRSSSARALSGRQ
AVLFERLRALRKELASRQGVPPYVVFSDSTLRDMCERMPRSEDEMLEVAGVGQAKLARYG
SDFLGAIEEFASRA
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccatcgacgaggcgcgccgagcgctcaaacggcatttcggatacgacgggttc
cgccccgggcaggatcgcatcgtgagcgcccttctggaggggcgcgactgtttgggagtt
atgcccacgggagcgggaaaatcggtgtgctaccagatcccggcggtggttctgggcggc
atcaccatcgtggtgtctccgctggtgtcgcttatgggcgaccaggtgcgcagcctcatc
gaggccggcgtgcgggcggcttatctgaactcctcgctgacccccggccagcaagacacc
gtgctcaggcgcgcgcgggagggatcctaccagatcatgtacgtcgcgcccgagcgcctg
tctgatccgcggttctcggcgttttcccggcaggccgaaatcgccctgttcgccgtcgac
gaatcgcactgcgtatcccagtggggccaggacttcaggccctcgtacttggggatcggc
gagttcgtggcgtcgctgccccgccgacccgtgttcgcggcgtttaccgcgacggcaacc
cagcaggtgagaagcgatatcgagcgcatactggggctgcgcgacccgttcacgatcgtc
acggggttcgaccgccccaacctcgccttctccgtcgagcagctgggaaccaagcgcaag
ctcgaccgcgtggcagagcaggtggcggcgcatccggccgacagcggcatcgtgtactgc
tcgacccgcaaggacgtcgaccgcgtgtgcgaggacctgcgcggcaggggcgtgtctgcg
acgcgctaccacgccggcctctccaattccgagcggacggaaaaccagcgcgcgttcgtc
aacgacgacgcccaggtgatggtggccaccaatgcgttcggcatgggcatcgacaagtcg
aacgtgcgctacgtggtccaccacaacatgcccggcagcatcgaggcgtactaccaggag
gcgggccgcgcgggccgcgacggcgaaccgtccgaatgcattcttctgtggaacgattcg
gacatcgcgacctgccgtttcttcgtcgaggccgattcgggcaacgagaggctcaccccc
gaggaagccgaccgggtgcgcatgacgcagcgccggctcctcgcatcgatggtggggtac
tgcaccaccacgcagtgccttcgcgcatacatcctggggtatttcggcgaacgatcggag
cgcgaccgatgcgggaactgctcgaactgtgcgggcgggttctcgacggtggacgtgacc
gcgaccgcgcgggcggtcatgcgctgcgtccacgagcttcgcggccagtacggcaagggc
atggtcgccgacgtcgtcaccggctcgcgcagccagaagatccgtactgcggggctcgac
cactgcttcacctacggcagcgtccaggattccgccagcacggtcaaagaggtgatcgag
cttctggcttcggcgcgctatctggaggtcagcgaggggaagtacccgctggtcggtttg
ggcgagcgttttcgcgaggcgtccgaagagggtttcaggctggagatgaagcgcgtgagc
gcgcccttgccggcggggcgctcgcgctcgtcgtcggcaagggcgctttcggggcggcag
gcggtgctgttcgagcgcctgcgggccctgcgcaaagagctggcttcccggcaaggggtc
ccgccgtacgtggtgttcagcgattcgacgttgcgggatatgtgcgagcgcatgccgcgc
agcgaagacgagatgctggaagtggccggcgtcgggcaggccaagctggcccgatacgga
tccgatttcctgggcgccatcgaagagttcgcgtctcgggcgtag
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