Berryella intestinalis: JI75_05830
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Entry
JI75_05830 CDS
T03545
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cbac
Berryella intestinalis
Pathway
cbac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JI75_05830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbac03021
]
JI75_05830
03400 DNA repair and recombination proteins [BR:
cbac03400
]
JI75_05830
Enzymes [BR:
cbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JI75_05830
Transcription machinery [BR:
cbac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JI75_05830
DNA repair and recombination proteins [BR:
cbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JI75_05830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AJC12252
UniProt:
A0A0A8BAR3
LinkDB
All DBs
Position
complement(1281099..1284620)
Genome browser
AA seq
1173 aa
AA seq
DB search
MAQGQNPTSTSRYRDRRSFAKIPGVMDVPNLIAIQTDSFDWFMTEGLDKAFASISPIENS
TKDMCVEFGGHSFGDPKYSVDECKEKDVSYQAPLFVNIRFINKETGEIKEQEVFMGDFPL
MTPRGTFIINGTERVVVSQLVRSPGVYFSAEADKTSARTIYNAKVIPSRGAWLEFETDKR
DVLHVRIDRKRKQPATLLVRALGLAETREEIIELLGSSEMVLRTLDRDPATTREESLIEL
YKRFRPGEPPTLDSARTLLDGLFFNPQRYDLAAVGRYKINKKLGIDASEDSSTLTDEDIT
RTMRYILALHNEQEGFGVDDIDHFGNRRIRTVGELIQNQFRIGLSRMERVVRERMGMQEP
DDITPQSLVNIRPIVASIKEFFGSSQLSQFMDQTNPAAGITHKRRLSALGPGGLSRERAG
FEVRDVHNSHYGRMCPIETPEGPNIGLIGSLATYARVNPYGFIETPYRRVVDGKVTDEID
YLTADEEENYVIAQANESFNAETRVFGHTDAQGNFVAAKRVLCRMKDAAGTFGEPGEVIP
ENVNYMDVSPRQMTSVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPTAPLVGTGIEHR
IAVDSGEILVAQNSGVVDYVDGQTIIILNNDGEYDEYLVPKFQRSNQSGCINHRPLVRKG
DEVHAGDVLADGPSCDCGELALGQNLMVAYMPWEGYNYEDATIIVSERVVSEDLLTSIHI
SEYEVDARDTKLGPEEITREIPNISDDLTADLDADGIIRIGAEVTPGDVLVGKVTPKGET
ELTAEERLLRAIFGEKAREVRDTSLKVPHGSGGRVIGVSRFTRDNGDELAPGVNELVRIY
IAQKRKVQQGDKLSGRHGNKGVISRVLPVEDMPYMTDGTPIDVILNPLGVPSRMNVGQLL
ENHLGWAAKWGWSDAAQTDEVVEGPMFVSTPVFDGAHEDEISDAIEHANRNLINRNHALY
GDLARDEFVPQLSRTGKTWLYDGRTGEKFREPITCGQTYILKLGHMVDDKIHARSTGPYS
LITQQPLGGKAQFGGQRFGEMEVWALYAYGASNVLQEILTVKSDDTAGRVQSYEAIVKGE
NIPAAEVPESFKVLVKEMRSLCLNVELEGSEVAAESAQEDEDQAMFDELTSAAAQTEADE
ASALDSIAAGMDDLMNDLGSTETNELLGEGEER
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtggctcaaggacaaaatcctacttccaccagccgttacagggaccgccgaagcttcgct
aagattccgggcgtcatggacgtccccaatcttatcgccatccagaccgacagtttcgac
tggttcatgactgaaggtctcgacaaggcgttcgcgagcatcagccccatcgagaactcc
actaaggatatgtgcgtggagttcggcgggcacagcttcggagatccgaagtactcggtc
gacgagtgcaaggagaaggacgtctcgtaccaggcaccgctcttcgtcaacatccgcttc
atcaacaaggagacgggcgagatcaaagagcaggaagtgttcatgggcgatttcccgctc
atgacgccgcgcggcaccttcatcatcaacggcaccgagcgcgtggtcgtttcccagctc
gtgcgttcccccggcgtgtacttctccgccgaggccgacaagacctccgcgcgcactatc
tacaacgcgaaggtcatccccagccgcggcgcctggctcgagttcgaaaccgacaagcgc
gacgttctgcacgtccgcatcgaccgcaagcgcaagcagcccgccacgctgctcgtgcgc
gccctcggcctggccgagacccgcgaggagatcatcgagctgctcggttcctccgagatg
gtcctgcgcaccctcgaccgcgaccccgccaccacccgcgaggaatcgctcatcgagctg
tacaagcgcttccgtcccggcgagccgcccacgctcgattccgcccgcacgctgctcgac
ggcctgttcttcaacccgcagcgctacgacctggcagccgtgggccgctacaagatcaac
aagaagctcggcatcgacgcctccgaagactcctccacgctcaccgacgaggacatcacg
cgcacgatgcgctacatcctcgcgctccacaacgagcaggagggcttcggcgtcgacgac
atcgaccacttcggcaaccgtcgcatccgcacggtgggcgagctcatccagaaccagttc
cgcatcggcctgtcgcgcatggagcgcgtcgtgcgcgagcgcatgggcatgcaggagccc
gacgacatcacgccgcagtcgctggtgaacatccgccccatcgtcgcctccatcaaggag
ttcttcggctcctcgcagctgtcccagttcatggaccagaccaaccccgccgccggcatc
acgcacaagcgccgcctgtcggccctgggccccgggggcctgtcgcgcgagcgcgcgggc
ttcgaggtgcgcgacgtccacaactcccactacgggcgcatgtgccccatcgagacgccc
gaaggccccaacatcggcctcatcggctcgctggccacctatgcccgcgtcaacccctac
ggcttcatcgagaccccgtaccgccgcgtggtggacggcaaggtcaccgatgagatcgac
tacctcacggccgacgaggaggagaactacgtcatcgcccaggccaacgagtcgttcaac
gccgagacccgcgtgttcgggcacaccgacgcccagggcaacttcgtcgcggccaagcgc
gtgctctgccgcatgaaggacgccgccggcaccttcggcgagccgggcgaggtcatcccc
gagaacgtgaactacatggacgtctctccccgtcagatgacctcggtcgcgacctcgctc
atcccgttcctcgagcacgacgacgcgaaccgcgcgctcatgggatcgaacatgcagcgc
caggccgtgcccctgctgcgccccaccgcgcccttggtcggaaccggcatcgagcaccgc
atcgcggtcgactccggcgagatcctcgtcgcgcagaactccggcgtggtcgattacgtt
gacggccagaccatcatcatcctgaacaacgacggcgagtacgacgagtacctcgttccc
aagttccagcgctccaaccagagcggctgcatcaaccaccgccccctcgtccgcaagggc
gacgaggtgcatgcgggcgacgtcctggccgacggcccttcgtgcgactgcggcgagctg
gcgctgggccagaacctcatggtcgcctacatgccctgggaaggctacaactacgaggac
gccaccatcatcgtgtccgagcgcgtcgtgtccgaagatctcctcacctccatccacatc
tccgagtacgaggtggacgcccgcgacaccaagctgggccccgaggagatcacccgcgag
atccccaacatctccgacgacctgaccgccgacctcgatgccgacggcatcatccgcatc
ggcgccgaggtcactccgggagacgtcctggtcggcaaggtcacgcccaagggcgagacc
gagctcacggccgaggagcgcctgctgcgcgccatcttcggcgagaaggcccgcgaggtg
cgcgacacgtcgctcaaggtgccccacggctccggcggccgcgtgatcggcgtcagccgc
ttcacccgcgacaacggcgacgagctcgctccgggcgttaacgagctggtgcgcatctac
atcgcgcagaagcgcaaggtccagcagggcgacaagctctccggccgccacggcaacaag
ggcgtcatctcccgcgtgctgccggtcgaggacatgccctacatgaccgacggcaccccg
atcgacgtcatcctcaacccgctgggcgttccctcccgtatgaacgtcggccagctgctc
gagaaccacctcggctgggcggcgaagtggggctggtccgacgccgcgcagaccgacgag
gtcgtcgagggccccatgttcgtctccaccccggtgttcgacggcgcccacgaagacgag
atctccgacgccatcgagcatgccaaccgcaacctcatcaaccgcaaccacgccctctac
ggcgacctggcgcgcgacgagttcgtgccccagctgtcccgcacgggcaagacctggctc
tacgacgggcgcacgggcgagaagttccgcgagcccatcacctgcggccagacctatatc
ctcaagctgggccacatggtcgacgacaagatccacgcccgctcgaccggcccctacagc
ctgatcacgcagcagcccctgggcggcaaggcccagttcggcggccagcgcttcggcgag
atggaagtgtgggcgctctacgcctacggcgcctcgaacgtgcttcaggagatcctcacc
gtcaagtccgacgacacggcgggacgcgttcagtcctacgaggccatcgtcaagggcgag
aacatcccggcggccgaggttcccgagtccttcaaggttctggtcaaagagatgcgctct
ttgtgcctcaacgtcgagctggagggcagcgaggtcgcggccgagtctgcgcaagaagac
gaagaccaggcgatgttcgacgagctgaccagcgcagccgcccaaaccgaggcggacgag
gccagcgcgctcgacagcatcgccgcaggaatggatgatttgatgaacgaccttggttcc
actgaaaccaacgaacttctcggtgaaggggaggagcgataa
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