Chitinophaga caeni: COR50_00780
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Entry
COR50_00780 CDS
T05360
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cbae
Chitinophaga caeni
Pathway
cbae02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
COR50_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbae03021
]
COR50_00780
Transcription machinery [BR:
cbae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
COR50_00780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_Mga
GerE
HTH_40
HTH_24
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ATL45809
UniProt:
A0A291QP80
LinkDB
All DBs
Position
185764..186336
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AA seq
190 aa
AA seq
DB search
MIQRKINELFVDMATNNDEESFRLLYDHCFVRVLRFSYSLTRSREVAEEITNDVFLHCWQ
KRASLQHIRNPEVYLFVVARNKAIDFRRKQANFHHVDLLEDIHVEIALESNPEEMMISAE
MVRRLELSIEQLPPKCKMIYLLIKQYGLKYQEVANILNLSIKTVENQLSIAVKRLTTAVK
FSFEKEEHHK
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgattcaacgaaaaattaacgagttatttgttgatatggcaacaaacaatgacgaagag
tcttttaggctcctgtatgatcattgttttgtacgcgttcttaggttttcatatagcctt
accaggtcgcgggaagtggccgaagagattacgaatgacgtgtttttacactgctggcaa
aagcgcgcctccctgcaacatatccgtaacccggaagtgtacctgttcgttgttgccagg
aataaagctatcgatttcaggaggaaacaagcgaattttcaccatgtagatttattggag
gatatacatgttgagatcgcgttggaaagcaacccggaagaaatgatgatatcagccgaa
atggtgcgtagattggagctgagcatcgagcagctcccgcccaaatgcaaaatgatttac
ctgctcataaagcaatacggccttaaataccaagaagtagctaacatcttgaacctttct
atcaagacggtggaaaaccagttatcaatcgcggttaagagattaacaacagccgtgaag
ttcagcttcgaaaaagaagagcatcataaataa
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integrated database retrieval system