Chitinophaga caeni: COR50_03110
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Entry
COR50_03110 CDS
T05360
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cbae
Chitinophaga caeni
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbae03016
]
COR50_03110
Enzymes [BR:
cbae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
COR50_03110
Transfer RNA biogenesis [BR:
cbae03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
COR50_03110
Prokaryotic type
tRNA splicing ligases
COR50_03110
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF993
DUF3173
Motif
Other DBs
NCBI-ProteinID:
ATL46238
UniProt:
A0A291QQG5
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All DBs
Position
761639..763045
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AA seq
468 aa
AA seq
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MKDELINGNDLIALGYPANAVMKECKIILETHLSTLPKEQALEKFKLVLEDTQAFTEDDI
WKNVAKILLSKPAKVIIELKDLSKSGTYNIFGQEYIEPGAKQQMQLAMRLPITHSGALMP
DAHQGYGLPIGGVLATDNAVIPYGVGVDIGCRMCLSILDIPLYHFDENASKFKRELIAHT
VFGAGAPRLKNRADHAVLHDPAFDQVPFLKQLQEKAAMQLGTSGSGNHFVEWGIVKIQDE
QNEWNLPTGKYVGILSHSGSRGLGAQVAGHYTKLAEKLCSLPQEVKRLAYLSLDSQEGQE
YWLAMELAGNYASACHHDIHQRLVEATGAEVLARVENHHNFAWKEQHGGKDLIVHRKGAT
PAGKGVLGIIPGSMTAPGFIVKGRGLATALDSASHGAGRLMSRKQALIKNNWNELRSMLK
DHNVTLIGAGLDEAPTAYKNINQVMQAQSELVDIVGTFKPRIVRMADA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatgaattgattaatggtaatgacttaatagcattgggatatcccgccaatgcg
gtgatgaaggaatgtaaaatcatcttggaaacacatttatcaacattacctaaagagcaa
gctttagaaaaattcaaattagtcttggaagatacccaagcatttactgaggacgatatt
tggaaaaatgtagcgaaaattttactatccaaacccgccaaagtaattattgaactgaaa
gatctaagcaaatccggaacttataatattttcggccaggaatatattgagccgggcgcc
aagcaacaaatgcagctagctatgcgtttgcctatcacgcattctggcgcgctaatgcct
gatgcacaccaaggctacggcttacctatcggtggcgtattggccaccgataatgcggtg
attccctacggtgtgggtgtggatatcggttgtagaatgtgtttaagcatcttggatatc
ccgttatatcattttgatgaaaatgcttctaagttcaagcgtgaattaatcgcacatacc
gttttcggcgccggggcgcccaggttaaaaaacagggcagatcatgccgttcttcacgat
cccgcattcgaccaagttccgtttttaaaacaactccaggaaaaggcggccatgcagtta
gggacctccggcagtggcaaccattttgttgaatggggaatcgtcaaaatccaggatgaa
caaaatgaatggaacttaccaaccgggaaatatgtcggtattttatcgcattcaggttcc
aggggtttgggtgcgcaggtagccgggcattataccaagttggcagagaaattatgttca
ttgccacaagaggtcaaaagattggcttatttgtcattggatagccaagaaggtcaggaa
tactggttggcgatggaattagccggaaattatgcgtcagcctgccatcatgatatccat
caacggctggtagaagccacgggcgcggaagtattggcacgggttgaaaaccatcacaac
tttgcatggaaagaacaacatggcggtaaggatttaattgttcatcggaagggtgctaca
cccgccgggaaaggggtattgggaattattcccggttctatgactgctcctggttttatc
gtgaaaggaagggggctggcaacagccttggattctgcatcgcacggcgccggtaggctt
atgtcaagaaaacaggcgctcattaagaacaattggaatgaactgcgcagcatgttgaag
gatcataatgtcaccttgatcggcgccgggttggatgaagcccctactgcttacaagaat
atcaaccaggtgatgcaggcgcagtctgaattggtcgatattgtcgggacgttcaaacca
cgtattgtccggatggcagacgcgtag
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