Chitinophaga caeni: COR50_03615
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Entry
COR50_03615 CDS
T05360
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cbae
Chitinophaga caeni
Pathway
cbae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COR50_03615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbae03021
]
COR50_03615
03019 Messenger RNA biogenesis [BR:
cbae03019
]
COR50_03615
Transcription machinery [BR:
cbae03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
COR50_03615
Messenger RNA biogenesis [BR:
cbae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
COR50_03615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
S1CSD-TOTE-2
AAA
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ATL49716
UniProt:
A0A291R0F0
LinkDB
All DBs
Position
complement(872174..873880)
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AA seq
568 aa
AA seq
DB search
MYDILQLNDMLVPELLDIAEKIDIPNAKKLDKQSLIYKILDKQAVMASEDQQEGEEKKTR
KRKTTTKKEEQPATEEEEKPKRGRKPAASKTAAKEEEKEKKETKASEAPKKRVLDLDIDL
DIPSLTFDDDEDIILPALTGEEEAVEEVEEEEDDEPIVDLSAFEDLPAATEEASPVEEPV
AQQKQKFGKRESSFNIEFDGVIVSEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIK
LFGLKTGDTVKGAVRPPKEGEKYFALLKVETINGKRPDEVRDRVPFDYLTPLFPFEKFTL
TTTQNNYSTRIMDLFTPIGKGQRGLIVAQPKVGKTMLLKEVANAIATNHPEVYLMVVLID
ERPEEVTDMERSVKAEVIASTFDEPAEKHVKVSAIALQKAKRLVECGHDVVILLDSITRL
ARAHNTVAPASGKVLSGGVEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSKMDEV
IFEEFKGTGNMELQLDRRLANRRIFPAIDVVASSTRRDDLLLDREVLSRVHILRNHLADM
NTEESMQFMLQHMRGTRSNEEFLTTMNR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacatcttacaactgaacgacatgctcgttcctgaactgcttgatatagcagaa
aaaatcgacattccaaacgcgaagaaacttgataagcaatccttaatctacaaaatcctt
gataaacaagcagtaatggcttctgaagatcagcaggaaggtgaagagaaaaagaccagg
aagcgtaaaacaacaacgaagaaagaagaacaacccgctacggaagaggaagaaaaaccc
aaaagaggacgtaagcctgctgccagcaaaactgctgctaaggaagaggagaaagaaaaa
aaggaaaccaaagctagcgaagcacctaaaaaacgcgtgttagacctcgatatcgatctt
gatataccttccctgacttttgatgacgatgaagatatcattttgccggccctcacgggt
gaagaagaagccgtggaagaagtagaggaggaagaagatgatgaaccgatcgtagatctt
tcggctttcgaagatcttcctgccgcgacagaagaggctagcccggtggaagaaccggtt
gctcaacaaaagcaaaaatttggaaaaagggaatcctcttttaatattgaatttgacggc
gtaatcgttagtgaaggcgtattggaaatgatgcctgatggctatgggttcttacgttcc
tccgattacaattacctcagttccccagacgatatttacgtatctccttcccaaatcaaa
ttattcggtttgaagaccggggatacggtgaaaggcgctgttcgcccacccaaagaaggt
gaaaaatatttcgccttactgaaagtggaaaccatcaatggcaaacgcccggatgaagtg
cgcgaccgcgttcctttcgattacttaacaccgctgttcccattcgaaaaattcacgctt
accactactcaaaataactactcaacccgtatcatggacctgtttaccccgatcggtaaa
gggcaacgtggtttgatcgtagcgcaaccgaaagttggtaaaaccatgttgctgaaagaa
gtggctaacgcgatcgctaccaaccaccccgaagtttacctgatggtggttttgatcgat
gagcgtcctgaagaggtaaccgatatggagcgtagcgtcaaagcggaagtgatcgcttct
actttcgatgaaccggctgaaaaacacgtaaaagtatctgctatcgccttgcaaaaagca
aaacggttggtagaatgcggccacgatgttgtgatcttattagattccatcacccgcctg
gcacgtgcccacaataccgtggctcctgcttccggtaaagtattgagcggtggtgtggaa
gctaacgcgatgcagaaaccgaaacaattcttcggcgctgcccgtaagatcgaaaacggt
ggttcccttaccatactggctacagccttgattgacaccggctccaaaatggatgaggtg
atcttcgaagagtttaaaggtaccggtaacatggaattgcaattggatcgccgcttagct
aacaggcgtatcttccctgctattgatgtggtagcttcttctacccgtagggatgactta
ctgttggatagagaggtgttatcccgtgttcatatcctgcgcaatcacttggcagatatg
aataccgaagaatcgatgcaatttatgttgcagcatatgcgcggcacgagaagcaacgaa
gaattcttgacaacgatgaaccggtaa
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