Chitinophaga caeni: COR50_05735
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Entry
COR50_05735 CDS
T05360
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cbae
Chitinophaga caeni
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cbae03009
]
COR50_05735
Enzymes [BR:
cbae01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
COR50_05735
Ribosome biogenesis [BR:
cbae03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
COR50_05735
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Cons_hypoth95
TRAM
Methyltransf_25
N6_N4_Mtase
Methyltransf_15
TRM5-TYW2_MTfase
PrmA
UPF0020
PCMT
Methyltransf_4
Methyltransf_12
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
ATL49745
UniProt:
A0A291R0P0
LinkDB
All DBs
Position
complement(1355327..1356754)
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AA seq
475 aa
AA seq
DB search
MRKKNVVLTDVPVTGYAAEGKALAKIDGKVIFIEGGVMPGDVVDVRLSKNKKDWAEGKAT
TIHTYSPDRVEPFCEHFGLCGGCKWQMMPYSLQLQYKQQQVQDHLSRIGRMPLPEMNPIL
GSELTEKYRNKLEFTFSNKAYLTTEEIAAAGDGEIMQRSALGFHVPRLFDKVLDINTCYL
QDEPTNLIRNTIKEYALANNLPFYDIRNHEGWLRNLVIRVLRTGEVMVNLVLHHESKEER
IALLDHLLAKVPSITTLLYTFNPKKNDSIFDLEPKVYFGKGYAEERLEDFTFKIGPKSFF
QTNTHQGERLYQVTRDFAGLTGNEVVYDLYCGTGSIGIFVSRMAKKVIGIELIKEAIDDA
IENADRNDVKNAQFYAGDVIDICDDAFFAAHGAPDVIITDPPRAGMHEKLVQKLLEIAAP
KIVYVSCNPATQARDLALLHEKYTVEKIQPVDMFPHTHHIENVVLLKRRDTDLTS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgagaaaaaagaatgttgttttaaccgatgttcccgttacgggatatgccgcggaaggt
aaggccttagcgaaaattgatggaaaagtgatcttcatcgaagggggcgtcatgcccggg
gatgtggtagatgtgaggttgagtaaaaacaagaaagattgggctgaaggtaaagctact
accattcatacctattcgccggatcgcgtggagccgttttgcgagcatttcgggctttgc
ggcgggtgtaaatggcagatgatgccatattcattacaattacaatataaacaacagcag
gtgcaggatcacttgagccggatcgggaggatgcctttaccggaaatgaacccgatactt
ggttcagagctcaccgaaaaataccggaacaagctggaattcaccttcagcaacaaggct
tacctcacgactgaagaaattgccgctgccggcgatggggaaatcatgcaacgttcggca
ctgggctttcatgtaccgaggttgtttgataaagttttggatatcaatacttgctacttg
caagacgaacctaccaaccttatccgtaacacgatcaaggaatatgccctggcaaataat
ttacctttttacgatatccgcaaccacgagggttggttgcgcaacctcgtgatccgggtt
cttagaaccggcgaagtgatggtaaacctcgtattgcaccatgaaagcaaggaagaacgt
atcgcattactagatcacttgctggcgaaggttccctctattactaccttattatatacc
tttaacccgaagaagaacgatagcatttttgacctggaacccaaggtttattttgggaaa
ggctacgcggaagaacgcttggaagattttaccttcaagatcggccccaagtcatttttc
caaactaatacgcaccaaggggaaaggctttaccaggttacccgcgattttgcggggctg
acaggtaatgaagtggtatacgatttgtactgtggtaccggaagcatcggcattttcgtg
tcgcgaatggctaaaaaagtgatcgggatagaactgatcaaggaggccatcgacgatgct
attgaaaatgcagatcgtaatgacgtgaaaaatgcccaattttatgcaggtgatgtaata
gatatttgtgatgatgcttttttcgcggctcacggtgcgccggacgtaattataaccgac
ccccccagggccggtatgcatgagaaattagtccaaaaattattagaaatagccgcccca
aaaatcgtgtatgtaagttgcaacccggctacacaagcccgcgacttggcattgttacat
gagaaatatacggtggaaaaaatacaaccggtagatatgttccctcatacgcatcatatt
gaaaacgtggtgttgttaaaacggcgtgataccgacttaacatcgtaa
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