Chitinophaga caeni: COR50_10385
Help
Entry
COR50_10385 CDS
T05360
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbae
Chitinophaga caeni
Pathway
cbae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COR50_10385 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbae03021
]
COR50_10385 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbae03400
]
COR50_10385 (rpoC)
Enzymes [BR:
cbae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
COR50_10385 (rpoC)
Transcription machinery [BR:
cbae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
COR50_10385 (rpoC)
DNA repair and recombination proteins [BR:
cbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
COR50_10385 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RnfC_N
Glyco_hydro_30C
Motif
Other DBs
NCBI-ProteinID:
ATL47543
UniProt:
A0A291QUK0
LinkDB
All DBs
Position
2434618..2438913
Genome browser
AA seq
1431 aa
AA seq
DB search
MAIKKENRPRSNFNSITISLASPDAILERSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIRLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLETIIYYERYVVIQSGVKQEKGLNYADLLTEEEYLDILDTLPKDNQLLPD
EDPNKFIAKMGAEAVEMMLARIDLDGLSYQLRNQAATETSQQRKAEALKRLSVVEAYREA
NTRVENRPEWMVMQYIPVVPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVDRKEA
VVWDILENVLKGHPVMLNRAPTLHRLSIQAFQPRLIEGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSNAAILEAQLLMLSSHNILNPQNGTPITLPSQDMVLGLYYISKGRKSTPEEPVK
GEGMAFYSAEEVIIAYNERRVELHAHIRVKTYVRNAKGELEFKLIETTVGRVLFNQFVPK
EAGFVNALLTKKSLREIIGDIIKATDIPKTAKFLDDIKQLGFRSAYRGGLSFNINDLIIP
EVKQMMVDSASGEVDEVWDNYNMGLITNNERYNQIIDIWSRVDTKVTETLIRELASDKQG
FNSVYMMLDSGARGSKQQIKQLAGLRGLMAKPRKSGSTGSEIIENPILSNFKDGLNVQDY
FISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINEEDCGTLRGIAISALKDNEEVV
EPLYDRILGRTSLHDVFDPVSEELYVAAGEQITEDVAKRIEESSIDTVEIRSVLTCESRR
GVCVKCYGKNLATGYTTQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESTLTA
KFDGTIQFDGLRTTTFENNDGNKVQVVIGRTGEVRIMDVKNDRLLITNNVPYGSTLVVKD
GQKVAKGDVICTWDPFNAVIVSEIPGKVRFDSIIEGITFREEADEQTGHREKVVIETKDK
NKIPSIYVDGDKDVKPYNLPVGSHIVIDEGESVRAGQVLVKIPRVLGKLRDITGGLPRVT
ELFEARNPSNPAIVSEIDGVVAFGNIKRGNREIIIESRESQIKKYLVPLTRHILVQDGDF
VKAGTALSDGSITPADILSIKGPFAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMRK
VTIEDPGDTRFLEGDTVDKFEFFEENDSIFDKKVVTEAGESATLKAGQIVTLRQVREENS
LLRRSDKKLVEFRDANAATSSPLLLGITKASLGTHSWISAASFQETTKVLSSAAINGKTD
DMLGLKENVITGHLIPAGTGLREFENMIVGSKEEYDILSASKEVFQFDEEE
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atggccataaaaaaagaaaatcgtcctagatcaaattttaacagcattaccattagcttg
gcgtctcctgatgcaatcttggaacgctcttatggtgaagtgttaaaacctgaaaccatc
aactaccgtacttacaagccggaacgtgatggtttattctgcgaaagaatattcggtcct
gtaaaggattatgaatgctattgcggtaagtacaaacgtatccgttacaagggtatcgtc
tgcgaccgctgtggtgtggaagttacagagaagaaagttcgccgcgaaagaatgggacac
atccgtttggtagtacctgttgtacatatctggtacttcaagtctttaccaaacaaaatc
ggttacctgttaggaatgtcttccaagaaattggaaaccatcatttattatgaaagatac
gtggtgatccaatccggtgtgaaacaagaaaaagggctgaattacgctgacttgttgacc
gaagaagaatacctcgatatcctggacacacttccgaaagataaccagctcttaccggat
gaagatccaaataaattcatcgcgaaaatgggtgcggaagcggttgagatgatgttggca
agaatcgatcttgacggcttatcttaccaattacgtaaccaggctgctaccgaaacttct
caacaacgtaaagcggaagctttgaaacgtttgagcgtagtggaagcataccgcgaagct
aatacccgcgtagaaaaccgtcctgaatggatggttatgcaatatatcccggttgttcca
ccagaattgcgtccactggttccactagatggcggccgtttcgcatcttctgatttgaat
gacctttaccgccgtgtaattatccgtaacaaccgtctgaaacgcttgatcgagattaaa
gctcccgaagtaatcttgcgtaatgagaaaaggatgttgcaagaagcggtagactccctg
ttcgataactccaggaaatcgaacgccgtgaaagcggaaggtggtcgcgccctcaaatct
ttgtccgatgtactgaaaggtaaacaaggccgtttccgtcaaaacttgttaggtaaacgt
gtggactactccggtcgttctgtaatcgttgtaggcccagagttgaaactccacgaatgt
ggtttgcctaaagatatggcggcggaattgttcaaaccgttcatcatccgcaaattgatc
gaaagaggcatcgtgaaaaccgtgaaatctgccaagaaattggtagatcgcaaggaagcg
gtagtttgggatatcttggaaaacgtattgaaaggtcacccggtaatgttaaaccgtgct
ccaacgttgcaccgtttatctatccaggctttccaaccacgtcttattgaaggtaaagcg
atccaattgcacccgttagtatgttccgcgttcaacgccgacttcgatggtgaccaaatg
gcggtacacgttcctttgagcaatgccgcgatcttggaagcacaattgctgatgctttct
tctcacaatatcttgaaccctcagaatggtacaccaattacacttccttcacaggacatg
gtactcggcctgtactacatctccaagggaagaaaatctacccctgaagaaccggtaaaa
ggggaaggcatggccttctattctgccgaagaggtgatcattgcttacaatgagcgcagg
gtagaattgcatgctcacatcagggttaagacttatgtgcgcaatgcaaaaggtgaattg
gaattcaaattgatcgaaaccacggtaggccgcgtattgttcaaccaattcgtaccgaaa
gaagcaggtttcgtgaacgcgttattgacgaagaaatctttgcgtgaaatcatcggtgac
atcatcaaggctaccgatattccgaaaactgcgaagttcttggatgatatcaagcaactc
ggtttccgttctgcataccgcggtggtttgtccttcaacatcaacgatttgatcatccca
gaggtgaaacaaatgatggtggacagcgcttccggtgaagtggatgaagtttgggacaac
tacaacatgggtctgatcaccaacaacgaacgttataaccaaatcatcgatatctggtcc
agggtggataccaaggttactgaaaccttgatccgcgaattggcttcggacaaacaaggg
ttcaactccgtgtacatgatgttggattccggtgcccgtggttctaaacaacagatcaaa
cagttggcaggtttgaggggattgatggccaaaccgcgtaagagtggttctacaggctct
gagatcattgaaaacccgatcttgtctaactttaaagatggtttgaatgtacaggattac
ttcatctctacccacggtgcccgtaagggtcttgcggatacagccttgaaaacggctgat
gccggttacctgactcgtaggttggtagacgtggcgcaagatgtggtaatcaacgaggaa
gattgtggtactttacgtggtatcgctatctccgcattgaaagataatgaagaagtagtt
gaaccgttatacgaccgtatcttgggacgtacttctctgcatgatgtatttgaccccgtt
tccgaggaattatacgttgctgccggtgaacaaattaccgaagatgtagcaaaacgcatt
gaagaaagttctatcgataccgttgaaatccgttccgtacttacctgcgaaagccgtagg
ggtgtgtgcgtgaaatgttacggtaaaaatctggccacaggctacaccactcaaagaggt
gatgccgttggtatcatcgcggcgcagtccatcggtgagccgggtacccagttaacactc
cgtaccttccacgtgggtggtgttgcgggctccgcttcggttgagtctacgctgactgcc
aagttcgacggtaccatccagttcgatggtttgagaacaactactttcgaaaataacgat
ggtaataaagttcaggtggttatcggtcgtaccggtgaggtgcgtatcatggatgttaag
aatgatcgcttgttgatcaccaataacgttccatacggttctaccctggtagtgaaagat
ggtcagaaagttgcgaaaggtgatgtgatctgtacttgggatccgttcaacgccgttatc
gtttctgaaattccgggtaaagttcgtttcgacagcatcatcgaaggtatcaccttccgt
gaagaagccgatgaacaaaccggtcaccgtgagaaagtggttatcgaaacaaaagataag
aacaagatcccgtctatttacgtagatggtgataaggacgtgaaaccttacaacttacct
gtaggttcccatatcgtgatcgacgaaggtgagagcgtaagagcaggacaggtgttggtg
aaaatcccgcgtgttcttggtaagttgagagatatcacgggtggtcttcctagggtaaca
gaattgttcgaggctaggaacccatctaaccctgcaatcgtatctgaaatagatggtgtg
gttgccttcggtaatatcaaacgtggtaaccgcgaaatcatcatcgaaagccgcgaaagt
caaatcaagaaatacttggtgccattaacccgccacatcctggtgcaagatggtgacttc
gtgaaagctggtacagcgctttcagatggttctattacaccggcagatatcttgtcaatt
aaaggtccattcgccgtacaagaatacttggtgaacgagatccaagaggtttaccgttta
caaggtgtgaaaatcaatgataaacacatcgaggtaatcgtgcgtcaaatgatgcgtaaa
gtaaccatcgaagatccgggagatacaaggttcttggaaggagataccgtggataaattc
gagttcttcgaagaaaacgattccatctttgataagaaagtggttaccgaagccggtgag
tccgctactttgaaagctggccagatcgttaccttgcgccaagttcgtgaagagaattca
ttactccgtcgttccgataagaaactggtggaattccgagatgcaaatgccgcaacatca
agtccgttgttgttgggtatcaccaaggcttccctcggtacgcatagctggatatccgca
gcttccttccaggaaacaacgaaagtattgtcttctgccgcgatcaacggtaaaactgat
gacatgctcggcttgaaagaaaacgtaatcacgggtcacctcatccctgcaggtaccggt
ttacgcgagttcgaaaacatgatcgttggttctaaagaagaatacgatatcctttctgct
tcgaaagaggtattccaattcgatgaagaagaataa
DBGET
integrated database retrieval system
