KEGG   Chitinophaga caeni: COR50_10800
Entry
COR50_10800       CDS       T05360                                 
Name
(GenBank) RNA polymerase subunit sigma-70
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
cbae  Chitinophaga caeni
Pathway
cbae02020  Two-component system
Brite
KEGG Orthology (KO) [BR:cbae00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    COR50_10800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbae03021]
    COR50_10800
Transcription machinery [BR:cbae03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     COR50_10800
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 Sigma70_ECF GerE HTH_11 HTH_40 UPF0122 HTH_24 MarR HTH_23 HTH_30 HTH_7 SANT_DAMP1_like HTH_Tnp_ISL3 wHTH_Par HTH_17 HTH_38 IL34 rve HTH_10 HTH_5 DUF6456 HTH_28 HD_assoc HTH_3 WHD_3rd_SelB HTH_20 HTH_AsnC-type MarR_2 Med20 LIP Acyl-CoA_dh_1 HTH_AraC HTH_DeoR
Other DBs
NCBI-ProteinID: ATL47614
UniProt: A0A291QUT9
LinkDB
Position
2523718..2524311
AA seq 197 aa
MSMLSNYSDEQLLLLLKDDHIPAFNTIYERYSRQVYLYILSKVDTNDTAKDILQEVFTSL
WERRRFAKIDSLKAYLYQGVRHKIIDIYRKEANYRKYLQQLIEHFDAHPHVITDHYDIKL
KAQEVLEAINHLPAKMKEVFMLSRFENMSIEQIADKLNLSPQTVKNQISKALKVLRTHYQ
SDMLMMIALGSLLYQHY
NT seq 594 nt   +upstreamnt  +downstreamnt
atgtcaatgttaagtaactactcggacgagcaattgttattgttactcaaggacgatcat
atacctgcatttaatacaatttatgagcggtatagccgccaggtgtacttgtatatttta
agtaaggtagatactaatgatactgcgaaagatatattacaggaagtatttaccagtctt
tgggaaaggagaaggtttgcaaaaatagattccttaaaagcgtatttataccaaggagta
cggcataaaattatcgatatataccgtaaagaagccaattataggaagtacttgcaacaa
ttgatagaacactttgatgcacatccgcatgtcattaccgatcattacgatataaaatta
aaagcccaggaggtactggaagctatcaatcaccttcctgcaaaaatgaaagaggtcttc
atgttgagccgctttgaaaatatgagtatcgagcagattgccgataaattaaacttatca
ccccaaacagttaaaaaccaaatcagtaaagcgctcaaggttttaagaacacattatcaa
tccgatatgctgatgatgatcgcgttaggatcattgttataccagcattattaa

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