Chitinophaga caeni: COR50_13850
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Entry
COR50_13850 CDS
T05360
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbae
Chitinophaga caeni
Pathway
cbae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COR50_13850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbae03019
]
COR50_13850
03009 Ribosome biogenesis [BR:
cbae03009
]
COR50_13850
Enzymes [BR:
cbae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COR50_13850
Messenger RNA biogenesis [BR:
cbae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
COR50_13850
Ribosome biogenesis [BR:
cbae03009
]
Prokaryotic type
rRNA helicases
COR50_13850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATL48160
UniProt:
A0A291QW54
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All DBs
Position
3286318..3288108
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AA seq
596 aa
AA seq
DB search
MTTFESLGLNESILKGIQELGFEAPTPIQEQAIPILLSGDKDFVGLAQTGTGKTAAFGLP
LLQQIDMKVTKPQGLILCPTRELCLQIANDLKNFSKFVGDVNIVAVYGGANIGMQLRELK
RGGQIVVATPGRLLDIIDRGAINFENVRYVVLDEADEMLNMGFQEDINSILSNTPDNKTT
WLFSATMPAEVRRISKNYMTDPFELTVGTKNSGNANIEHEYYVVRPRDKYAALKRIVDFN
PEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFRERSIQVLVATD
VAARGIDVDNITHVINYELPDDVENYTHRSGRTARAGRSGVSIAIISSRDLGKIRQIERV
IGKKFIKAEVPDGVAVCEKQLFALVHKVHNVVVNEEQIEPYLGRIYEEFNELSKEELIKR
FASIEFNQFLEYYQDAADLNVKEDSRRSSEGRSSSGRGSGDGKFTRLFINLGSVDDFTRG
DMLRFICDNTGLRGNKVGRIDLKGVYSFFEVENEAVDKVVTGFKKVERNGRAVRIEMSQD
GGNEGGGGGRRRSSGGRRDEGGGRRRSWSGGGSEGGFRERKEYGGRPSFRGRKYEK
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaatcattaggattaaatgaatccattcttaaaggtatccaagagcta
ggtttcgaagctccaactccaatccaagaacaagcgatccccatcttgttaagtggcgat
aaggacttcgtaggattagctcaaacgggtacaggtaaaaccgcggcctttggtttacct
cttttgcaacaaattgatatgaaggtcacgaagcctcaaggcttgatcttatgtcctaca
cgcgaattgtgtcttcaaatcgcgaatgatcttaaaaactttagcaagtttgtaggtgat
gtaaacatcgtggccgtttacggtggcgctaacatcggtatgcaattgcgtgaattgaaa
cgcggtggccaaatcgtggtagctacccccggtcgtttactcgatatcatcgaccgtggc
gcgatcaatttcgaaaatgtacgttacgtcgtattggatgaagcggatgaaatgttaaac
atgggcttccaagaagacattaacagcatcctttccaacacgcctgacaacaagaccacc
tggttgttctcggctaccatgccggcagaggtgcgtcgtatctctaaaaactacatgacc
gacccatttgaattaacagtgggtactaaaaatagcggtaacgctaatatcgaacacgaa
tattacgtggtacgtccacgcgataaatacgcggcgctgaaaaggatcgtggatttcaac
cctgaaatcttcggtattatcttcacccgcaccaagatcgaatcccaggaaattgcagaa
tccctgatccgtgacgggtacaatgccgatgctttgcacggtgaccttacccagcaacaa
cgtgataaggtgatgaagcgtttccgcgaaagatctatccaagtgctggttgctacggat
gtagctgcccgcggtatcgatgttgacaatatcacccacgtaatcaactatgaattaccg
gatgatgtcgagaactatacccacaggagtggtcgtactgcccgcgccggtcgtagcggt
gtatctatcgctattatcagcagcagggatctgggtaagatccgccagattgaaagggtg
atcggcaagaaattcatcaaggcagaggtgccggatggtgttgccgtttgtgaaaaacaa
ttgtttgcccttgtacataaagtacacaacgtggttgtaaacgaagagcagatcgagccg
tacttaggacgtatctacgaagagtttaacgaattgagcaaagaagagctgatcaagcgt
ttcgcttctatcgagttcaaccaattcttagaatattatcaagatgcagcagatctgaat
gtgaaagaagatagccgccgttcttctgaaggacgcagcagcagcggtaggggtagcggt
gatggcaaatttacacgcctgttcatcaaccttggttccgttgacgatttcacacgtggt
gacatgttgcgtttcatctgcgataataccggcttgcgcggcaacaaggtaggtcgcatc
gacctgaaaggagtttattctttcttcgaagttgaaaatgaagctgttgataaagttgtt
accggttttaagaaagtagaacgtaacggccgtgccgttcgtattgaaatgtctcaagac
ggtggtaacgaaggtggcggaggcggaagacgccgcagtagcggtggccgtcgtgatgaa
ggtggcggtcgcaggagatcttggtccgggggaggttctgaaggcggtttccgtgaaaga
aaagaatacggtggtcgtccttccttcaggggcaggaaatatgagaaatag
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