Chitinophaga caeni: COR50_19425
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Entry
COR50_19425 CDS
T05360
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cbae
Chitinophaga caeni
Pathway
cbae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
COR50_19425 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbae03400
]
COR50_19425 (recD)
Enzymes [BR:
cbae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
COR50_19425 (recD)
DNA repair and recombination proteins [BR:
cbae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
COR50_19425 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
NAT10_TcmA_helicase
UvrD-helicase
RecD_N
AAA_22
UvrD_C
SLFN-g3_helicase
Herpes_Helicase
nSTAND3
PhoH
SRP54
AAA_28
AAA_24
NTPase_1
AAA_16
CbiA
AAA_29
Flavi_DEAD
TrwB_AAD_bind
T2SSE
MeaB
Motif
Other DBs
NCBI-ProteinID:
ATL49170
UniProt:
A0A291QYY6
LinkDB
All DBs
Position
complement(4648381..4650162)
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AA seq
593 aa
AA seq
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MRPFVTFNDVHQQFATYFDPASIRPFAYLLSRKLSEGHICLDLDDISSMEAYLPAGWTLP
SDIYGALQKIPIIGWEENAYQPFIVDKGKLYLQRYFKYEQQVYRKLKSIIHHEQQLRAQR
TQELSALRDFIRQLFPPNNPVLSIDWQLIAALTAVLNNFTIITGGPGTGKTTTVAKLLAI
LYTLNPGLKVALAAPTGKAAARMAESLRKNPASGLPRVAEKFQELVPSTIHRLLRSIHGS
PYFKYNAENPLPYDVIIVDESSMIDVALFSKLLDAVGAGSRLIMLGDKNQLASVEAGSMF
GDICQSLPGINTFDDAMKGFLEQFTAASLPLTAATGDQNLLFQHIIELQFSHRFKDTSGI
GRLSKAIINNDPAVIEAFTGQADPGVLFDTGSDKKIFNEFIDGYRGFIQTPGIHGALSKL
NQLRVLVAVREGDQGLYQVNQAIEDYLSAEKLLHIHQVFYENRPIMLTKNYYEHGLFNGD
TGIIRSDEEGTMKAWFDDGNGGLISVLPGYLSDSETAFAMTIHKSQGSEFNKVLVLVPAR
EETPILTRELLYTAVSRAKQQVVLQGSMKNILMAASRKVERASGIARRLQENN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcgccctttcgtaactttcaatgatgttcatcaacagtttgcaacatattttgatcct
gcatccatacggcccttcgcttatttgctatcaaggaaattaagcgaagggcatatttgc
ctagacctggatgatatctcgtcgatggaagcgtacctccccgcgggatggacgttaccc
tccgatatttatggagccttacagaaaattcctatcatcggctgggaagaaaatgcttac
cagccttttatagttgataagggaaaattgtacttgcagagatatttcaaatacgaacaa
caggtatatcgcaagttaaagtcgatcatacatcatgaacaacaactccgcgcacagaga
acgcaagaattatcggccctgcgcgattttatccggcagttattccctcccaacaatccc
gttttatctattgattggcaattaatcgctgcattaacagccgtactcaacaattttacg
attatcacgggaggccccggtaccgggaagactacaacggtagccaagctcctcgcgata
ctatatacattaaacccggggctgaaagtggccttggctgctcccacgggcaaggctgct
gcccgtatggcagaaagtttaaggaagaatcccgcttcgggattaccgcgggtagccgag
aaatttcaagaactggttccttcaacaatccatcgactattaagatccattcacggtagc
ccgtatttcaaatataacgctgaaaatcctttaccatacgatgtgattatcgtggatgaa
tcctcgatgatcgatgtagcgctattctcgaaattactggatgccgtaggcgccgggagc
cgtttaattatgctcggtgataagaatcaattggcttctgtcgaagccgggagcatgttt
ggtgatatatgccaatccttaccgggaataaacaccttcgatgatgctatgaaaggtttt
ttagagcaattcacggcagcctccttgccgttaactgccgctaccggggatcaaaattta
ttattccagcatataattgaattgcaatttagccatcgatttaaagatacgagcggaatc
ggtcgcttgagtaaagctatcataaataatgatccggcagttatcgaagcattcactggg
caagctgatcccggcgtgctgtttgataccggtagtgataaaaagatatttaacgaattt
atcgatgggtaccgcgggttcatccaaactccgggtatccacggcgcgttaagtaagctc
aaccaattgagggtactagtagccgtgcgggaaggcgatcaaggtctttaccaggtcaat
caggcaatagaagattatttgtcggctgaaaaattgcttcatattcaccaggtattttac
gaaaacaggccaatcatgcttacgaagaattattatgaacacggtttatttaacggcgat
accggtattatcaggagtgatgaagaaggaacgatgaaggcttggttcgatgatggtaat
ggtggcttgatctccgtgttgccaggctatttgtcggattcggaaaccgctttcgctatg
acgatccataaaagccagggctccgaatttaacaaggttttagtgctggtgccggccagg
gaagaaacgccaatacttacgagggaattactttatacggctgttagccgcgccaaacag
caagttgtcttgcaaggaagcatgaaaaatatcttgatggccgcttcccggaaagtggaa
agagcatcgggcatcgcgcggagattacaagaaaataattag
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