Clostridiales bacterium FE2010: JS518_03220
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Entry
JS518_03220 CDS
T08976
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbaf
Clostridiales bacterium FE2010
Pathway
cbaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JS518_03220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbaf03021
]
JS518_03220 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbaf03400
]
JS518_03220 (rpoC)
Enzymes [BR:
cbaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JS518_03220 (rpoC)
Transcription machinery [BR:
cbaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JS518_03220 (rpoC)
DNA repair and recombination proteins [BR:
cbaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JS518_03220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
SidF
Motif
Other DBs
NCBI-ProteinID:
QTE74913
LinkDB
All DBs
Position
complement(712500..716069)
Genome browser
AA seq
1189 aa
AA seq
DB search
MFELSNLDSIQIGMASPEQILAWSHGEVTKPETINYRTLKPERDGLYCERIFGPTKDWEC
NCGKYKRIKFKDKDKICDKCGVQVTRAKVRRERMGHIQLAAPVSHIWYFKGIPSRMGMLL
DISPRNLEKVLYFANFIVLDPGNSEETGLKRLELINDARYREVEAKCGKGSFVAKMGAEA
VQDLLKELDLEKLSADLKAEIAQLTEKERDRETEGQKRARAVKRLEVVESFRTSHNKPEW
MILSVVPVIPPDLRPLIQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEK
RMLQESVDALIDNGRRGRPVTGPGNRALKSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIV
VGPELKLYQCGLPKEMALELFKPFVMERLVSLKLSHNVKSAKRAVEKVRPEVWDILEEVI
RDHPVLLNRAPTLHRLGIQAFEPILVEGKAIKLHPLACTAFNADFDGDQMAVHVPLSMEA
QAEARFLMLAHNNILKPQDGRPVISPSQDMVIGCYYLTIVHEGALGSGRVFSSEDEAIMA
YSLGQITLQSPIKVRIFRTFGEESGSKLIDTTLGRLIFNDALPQNLGFVKRECLDDMFKL
EIDELVGKKQLSKIVDQCFHTQGEHKTAQVLDKIKALGFKYSTVGAITVSVADIKVPEVK
KTMLEEADEAVRKVNALYRKGLLSEDERYNRVINIWTECTANLKNQILPNLDKFNPIRMM
TDSGARGSSAQVSQLAGMRGLMASPSGKTIELPIRANFREGLTVLEFFLSSHGSRKSLAD
TALRTADSGYLTRRLVDVSQEVIVREDDCFESRGEKVRGISVAELMSGKQSIESLEDRLR
GRTAAEDIVDPATGEVLVRLNEPIDYQMAREIVARGITKATVRSVLTCRTENGVCARCYG
ENMAHGGKVDVGEAVGIIAAQAIGEPGTQLTMRTFHTGGIAGADDITQGLPRVEELFEAR
KPKRDAILAEIAGTVSIQETKKRRELVITSDEDPKDTKAYQITYGSRLKVGVGDHVEAGD
ELTEGSVNPHDLLRILGVKAVQEYLLKEVLSVYRLQGVGVSDKHIEIIIRQMLRKVRVED
SGDTDLLTGSLVDIFNFEEANRKAIMEGGTPAIAKRILLGITKASLATESFLSAASFQET
TRVLTEAAIRGKIDPLIGLKENVILGKLIPAGTGMKRYKDIEIKDSYSF
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgaactttctaatcttgactccattcagatcggtatggcttctccggagcagatc
cttgcctggtctcacggtgaagttaccaaacccgaaaccattaactaccgcacgctgaag
cccgaacgggacggtctgtactgcgaacgcatcttcggacccaccaaggactgggagtgt
aactgcggtaaatacaagcggatcaagttcaaggacaaggacaagatctgtgataagtgc
ggcgtgcaggtcacccgcgccaaggttcgccgggaacgtatgggtcatattcagctggcc
gctcctgtcagccacatctggtatttcaagggaattcccagccggatgggcatgctgctg
gatatctccccccgcaacctggaaaaagtcctgtatttcgccaacttcatcgtgcttgat
cccggcaacagcgaagaaaccggcctgaagcgcctggagctgatcaatgacgcgcgttat
cgtgaagtcgaagccaagtgcggcaagggctccttcgtcgccaagatgggtgccgaagct
gtccaggacctgctgaaggaactggatcttgaaaagctctccgccgacctgaaggctgag
atcgcccagctgaccgaaaaggaacgcgaccgcgaaaccgaaggccagaagcgcgcccgt
gctgtcaagcgcctggaagttgttgaatccttccgtaccagccacaacaagccggagtgg
atgatcctctccgtggtgccggtgatccccccggatctccgtcccctgatccagctggac
ggcggccgtttcgccacttccgacctgaacgacctgtatcgccgggtcattaaccgtaac
aaccgtctgaagagactgcttgagctgggcgctccggacatcatcgtccgcaacgaaaag
cgcatgctgcaggaatctgtggacgccctgatcgacaacggccgccgcggccgtccggtc
actggtcccggaaaccgtgccctcaagtccctgtcggatctgctccgcggtaagcagggt
cgtttccgtcagaacctgctgggtaagcgcgttgactattccggccgttccgttatcgtc
gtcggtcctgaactgaagctgtatcagtgcggtctgccgaaggaaatggccctggaactg
ttcaagcccttcgtcatggagcgtctggtttccctgaagctctcccacaacgtcaagtcc
gccaagcgggctgttgaaaaggttcgtcctgaagtctgggacatcctggaagaagtcatc
agggatcatccggttctgctgaaccgtgctcctaccctgcaccgtctgggtatccaggcc
ttcgagccgatcctggttgagggcaaggccatcaagctgcatcccctcgcctgtaccgct
ttcaacgccgacttcgacggcgaccagatggctgtacacgttccgctttccatggaagcc
caggctgaagcccgcttcctgatgctggcccataacaatatcctgaagccgcaggatggc
cgtccggtcatttctccctctcaggacatggttatcggctgctactacctgaccatcgtc
cacgaaggagccctgggttccggacgggtcttctcctccgaggatgaagccatcatggct
tactccctgggccagatcaccctccagtcccccatcaaggtccgcatcttccgtaccttc
ggtgaggaatccggctccaagctgatcgacaccaccctgggccgcctgatcttcaacgac
gcgctgccgcagaaccttggtttcgtgaagcgtgaatgcctggacgatatgttcaagctt
gaaatcgatgaactggtcggcaaaaagcagctgtccaagatcgttgaccagtgcttccac
acccagggcgaacacaagaccgcccaggtgctggacaagatcaaggcgctgggcttcaag
tactccaccgtgggcgccatcaccgtgtccgttgcggacatcaaggtgcctgaagtgaag
aagaccatgctggaagaagctgacgaggctgtccgcaaggtcaacgccctgtaccgcaag
ggtcttctttccgaagacgagcgttacaaccgcgttatcaatatctggaccgagtgcacc
gcgaatctgaagaaccagatcctgccgaacctcgataagttcaacccgatccgcatgatg
accgactccggcgcccgcggttcttccgcgcaggtgtcccagctggccggcatgcgcggc
ctgatggcctctccttccggtaagaccatcgagctgcctatccgcgctaacttccgtgag
ggcctgacggttctggaattcttcctctcctctcacggttcccgtaagtccctggccgat
accgccctgcgtaccgctgactctggttacctgacccgtcgtctggtggacgtttcccag
gaagttatcgtccgggaagatgactgcttcgaatcccgtggtgaaaaggtccgcggtatc
agcgtggccgaactcatgagcggcaagcagtccattgagtccctggaagatcgtctccgc
ggccgtaccgctgctgaagacatcgtcgatcccgccaccggcgaagtgctggtccggctg
aacgagcccatcgattaccagatggcccgtgagatcgttgccaggggcatcaccaaggcc
actgtccgttccgtcctcacctgccgcaccgaaaacggcgtctgtgcccgctgctacggc
gagaacatggcccacggcggcaaggtggatgtcggtgaagccgtcggtatcatcgccgca
caggctatcggtgaacccggtacacagctgaccatgcgtaccttccataccggcggtatc
gcaggcgctgacgacatcacccagggtcttccccgcgttgaggaactgttcgaggctcgc
aagccgaagcgtgacgccatcctggctgaaatcgccggcacggtatccatccaggagacc
aagaagcgccgcgaactggtcatcacctccgatgaggatcccaaggacaccaaggcttat
cagattacctacggttcccgcctgaaggtcggcgtaggcgatcatgtggaagccggcgat
gaactgaccgaaggttccgtcaatccccatgacctgctccgtatcctcggtgtgaaggcc
gtccaggaatacctgctgaaagaagttctctccgtctaccgcctccagggcgttggcgtg
agcgacaagcacatcgaaatcatcatccgccagatgctgcgcaaggtacgcgtggaagac
agcggagacaccgatctgctgaccggctccctcgtggatatcttcaactttgaggaagcc
aaccggaaagccatcatggaaggcggcacccccgccatcgccaagcgtatcctgctgggc
atcaccaaggcttctctggccaccgaaagcttcctgtctgccgcttccttccaggagacc
acccgcgtgctgaccgaagccgctatccgcggcaagatcgacccgctgatcggtctgaag
gaaaacgtcatcctgggcaagctgatccccgccggtaccggcatgaagcgctacaaggac
atcgaaatcaaagattcctacagcttctaa
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