Cellulophaga baltica NN016038: M667_08585
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Entry
M667_08585 CDS
T03562
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M667_08585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbal03019
]
M667_08585
03016 Transfer RNA biogenesis [BR:
cbal03016
]
M667_08585
Enzymes [BR:
cbal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M667_08585
Messenger RNA biogenesis [BR:
cbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M667_08585
Transfer RNA biogenesis [BR:
cbal03016
]
Prokaryotic type
tRNA degradation factors
M667_08585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AIY13262
LinkDB
All DBs
Position
complement(1988947..1991181)
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AA seq
744 aa
AA seq
DB search
MIPKVFREVIDLGDGREISIETGKLAKQAHGSVVVQSGNCMLLCTVVSNYKQSDVDFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMS
HDDDVMPEAMAGLAASAAIQLSDFPFECAISEARVGRINGEFVINPTRAQLEESDLEMMI
GASADSVMMVEGEMDEISEEEMADAIKFAHEAIKVQIAAQLRLAEAFGKKEVREYTTAEV
NEDLQKRIHDLAYDKCYAIAKKGTSKAERTAAFAEVKEEVKASFTEEEMEEFGHLVSGYY
SKAEKEAVRELTLSEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLG
TSRDANKIDMPSYEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIPA
DCPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVKMKRPVSGIAMGLISDGDRYAVLS
DILGDEDHLGDMDFKVTGTSEGITACQMDIKIKGLSYEILVNALKQAREGRLHILGKITD
TISAPAEDVKSHAPKMVTRRIPNEFIGALIGPGGKVIQEMQKETGTTIVINEDPVTEEGI
VEILGVGQEGIDAVLAKIDAILFKPELGKSYEVKVIKMLDFGAVVEYAAAPGNEVLLHVS
ELAWERTENVSDVVNMGDVFEVKYFGIDPKTRKEKVSRKALLPKPEGYVARPPRDDKRSG
GRDNRGRDNRGRDDRKPREDKKED
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtatttagagaggttatagaccttggggacggtagagaaatttctatc
gaaaccggaaaattagcaaaacaggcacatggttctgttgttgttcaatcaggaaactgt
atgttattatgtacagtagtttccaattacaaacaaagcgatgtggactttcttccactt
actgtagattacagagaaaaatttgctgctgcaggtcgttacccaggtggtttctttaaa
agagaagcaagacctagtgatggtgaggtattaaccatgcgtttagtagaccgtgtttta
cgcccattattcccaaaagattatcacgcagaaacacaagttatgattcagttaatgtct
catgatgatgatgttatgcctgaagctatggccggtttagctgcttctgctgctatccaa
ttatcagatttcccatttgaatgcgctatctctgaagcaagagttggtcgtattaatggc
gaattcgtaatcaaccctacaagagcacaattagaagaatctgacttagagatgatgatt
ggtgcttctgcagattctgtaatgatggttgaaggtgagatggatgaaatttctgaagaa
gaaatggctgacgctatcaaatttgctcacgaagctattaaagtacaaattgctgcacag
ttgcgtttagctgaagcttttggtaaaaaagaagttcgtgaatacacaactgccgaagta
aatgaagatttacaaaaaagaatacacgatttagcttacgataaatgttacgctattgct
aaaaaaggaacttctaaagcagaacgtactgctgcatttgcagaagtaaaagaagaggta
aaagcttcttttacagaagaagagatggaagaatttggccatcttgttagcggatactac
agcaaagctgaaaaagaagccgttcgtgaattaacattaagcgaaggcttacgtttagat
ggtcgtaagactgatgaaattagaccaatctggtgtgaagtagattacttaccatctaca
cacggttcttctatttttacgcgtggagaaacacaagcattagcaactgtaactttaggt
acttctagagatgctaacaaaatagatatgccatcttatgaaggcgaagaaaatttctat
ttacattataacttccctcctttttgtacaggtgaagctagaccactaagaggaacttct
agaagagaagttggtcatggtaacttagcgcaacgtggtttaaaaggaatgattcctgca
gattgcccttatacagtccgtgtagtttctgaagtattagaatctaacggttcttcttct
atggcaactgtttgtgctggtacaatggctttaatggatgctggtgttaaaatgaagcgt
cctgtttctggtattgccatgggactaatttctgacggtgaccgttatgctgtattgtct
gatatattaggtgatgaagatcacttaggagatatggactttaaagtaactggtacttct
gaaggaattactgcttgccaaatggatattaaaattaaaggattatcatacgagatttta
gtgaatgcactaaaacaagcacgtgaaggtcgtttacatattttaggtaaaattacagat
actatttctgctccagctgaagatgttaaatctcacgctccaaaaatggtaactagacgt
attcctaacgaattcattggtgctttaattggtcctggtggaaaagttattcaagaaatg
caaaaggaaactggaacaactatcgttatcaacgaagatcctgttacagaagaaggtatt
gttgagatcttaggtgtaggacaagaaggtattgatgctgttttagctaaaatagatgct
atcttatttaagcctgaacttggtaaatcttacgaagtaaaagtaattaaaatgttagat
tttggcgctgttgtagaatatgctgctgctccaggaaacgaggttttattacatgtatct
gaactagcttgggaacgtacagaaaatgtttctgatgttgttaatatgggtgatgttttt
gaagtgaagtactttggtatagatcctaaaactcgtaaagagaaagtatctcgtaaggct
ttattaccaaaacctgaaggttatgttgctagaccaccaagagatgacaaacgttctggt
ggacgtgataacagaggtagagacaatcgtggacgcgatgatagaaaaccaagagaagat
aaaaaagaagattaa
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