Cellulophaga baltica NN016038: M667_16890
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Entry
M667_16890 CDS
T03562
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M667_16890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbal03019
]
M667_16890
Enzymes [BR:
cbal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M667_16890
Messenger RNA biogenesis [BR:
cbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M667_16890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
UTP25_NTPase-like
PHB_acc_N
Motif
Other DBs
NCBI-ProteinID:
AIY14710
LinkDB
All DBs
Position
complement(3886097..3887446)
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AA seq
449 aa
AA seq
DB search
MSSFEDFNLKKQLNYAIEDLKFSTPTPIQDAAFSVVMSGKDIVGIAQTGTGKTMAYMLPI
LQELGFSKQVHPRVLVLVPTRELVLQVVENIESFAKYINVRVLGVYGGVNINTQKQQCVQ
GTDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINIFDLLPARRQNI
MFSATMTSDVDALIDDFFVAPEKVSIAVSGTPLENIAQVCYAVPNFYTKVNLLIRLLKDK
DTFKKVLVFVGNKRFADKVFEEMEEAFGSESCVIHSNKSQNYRMRSIRQFDEGQNRILVT
TDVMARGLDLDKITHVINFDTPNYPENYMHRIGRTGRAEHQGNSVLFYTEKEEPSKDDIE
TLMDYKIPLLAIPENVEISEELIAEERPRIIETDNPNQTTLASQGSFHEKKEKNKKTNQG
GSYQRIIAKKYKKPKTKGDKNYNKRNKKK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttttgaagatttcaatttaaaaaaacaactaaattacgcgattgaagattta
aaattttcaacaccaacacctatacaagatgcggctttttctgtggttatgtcagggaaa
gatatagttggaattgcacaaacaggcactgggaaaacaatggcttacatgctgccaata
ttacaagaattaggtttttctaagcaagtacatcctagagttttagtattagttccaaca
agggagttagtattacaagtggtggagaatattgaaagctttgctaaatatatcaatgta
cgtgttttaggtgtgtatggcggtgttaatataaatacgcaaaaacaacaatgcgttcaa
ggaacagatattttggtggcaacaccaggaagattgtatgatctggctctttctaaagct
gtaaaattaaaagaagtaaaaaaattagtaattgatgaagtagatgtgatgttggattta
ggattccgattccaactgataaatatctttgatttactaccggctcgaagacaaaatatt
atgttttctgcgacgatgacgagtgatgtagatgcacttatcgatgattttttcgttgcg
ccagaaaaagtttctattgcagtgagtggtactccgttagagaatatcgcacaggtatgc
tatgcggttcctaatttttataccaaagtaaatttattgattcgcttattaaaagataag
gataccttcaaaaaagtattagtttttgttggtaataagcgttttgcagacaaggttttt
gaagaaatggaggaagcttttggaagcgaatcttgtgtaattcactccaataagtctcaa
aactatagaatgcgatccattcgtcagtttgatgaaggtcagaatcgtattctggtaact
accgatgttatggcacgtggtttagatttagataaaattacgcacgtaatcaactttgat
acgccaaattaccctgaaaactacatgcatagaattggtagaacgggtagggcagagcac
caaggtaattctgttttattttatacagaaaaagaagagccttctaaagatgatattgaa
actttaatggattataaaattccgttgctagcaattcctgaaaatgtagaaatctcagaa
gagctcatagcggaggagcgccctagaattattgagacagataatcccaaccaaacgaca
ctagcttctcagggtagctttcatgaaaagaaagagaagaataaaaaaacaaatcaagga
ggttcttaccagcgcattattgctaaaaaatataagaagcctaaaactaagggagataag
aactataataagagaaataagaagaagtaa
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