Cellulophaga baltica NN016038: M667_17985
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Entry
M667_17985 CDS
T03562
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M667_17985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbal03019
]
M667_17985
03009 Ribosome biogenesis [BR:
cbal03009
]
M667_17985
Enzymes [BR:
cbal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M667_17985
Messenger RNA biogenesis [BR:
cbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M667_17985
Ribosome biogenesis [BR:
cbal03009
]
Prokaryotic type
rRNA helicases
M667_17985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIY14902
LinkDB
All DBs
Position
4122838..4124760
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AA seq
640 aa
AA seq
DB search
MTKFEALGLKKSILDAITDMGFENPSDVQEKAIPILLGDDTDLVALAQTGTGKTAAFGFP
LIQKINADSRTTQGLILSPTRELCLQITNEMQAYSKYEKNINVVAIYGGASITDQARQIK
RGAQIIVATPGRMKDMMSRGLVDISKIDYCVLDEADEMLNMGFFEDIKEILSDTPKEKST
WLFSATMPREVATIAKKFMRSPQEITVGTKNSGASTVQHEYYVVSGRDRYPALKRLADTN
PDIFSVIFCRTKRDTQKVAESLIEDGYNAGALHGDLSQNQRDLVMSSFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAIENK
IGQKFITKNIPSGMEICEIQLYHLANKIKDTEVNEEVESYLPAINDVFKDIDREELIKKV
VSVEFTRFFNYYNKTRDLNSGNSDRGDREERGSNTGSGEIPTSGSVRYFINVGEKDEYDW
MSLKDFLRDTLEVGQDDIFKVDVKESFSFFNTDAAITPKILETFKDFKVDGRFVNVEISS
NPGGGGGRGGRDRNRSAGGGGGGGSRGGRDRNRGGGGGGGDFKKRRSSSSRDGGYGGGSS
EGGGSRRRSSDSGSSSRSSSRSGSRESSSGSKSKRRSGFF
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagcgttaggccttaaaaagtctattttagacgctattacagacatg
ggttttgaaaacccatctgacgtacaagaaaaagcaattccaattttactaggtgatgat
acagacttagtagcccttgcccaaacaggtacaggaaaaacagcagcatttgggttccca
ttaattcaaaaaataaatgcagatagtagaaccactcaaggtttaatactatcaccaaca
cgtgagctttgtttgcaaattacaaacgaaatgcaagcgtattctaaatacgaaaaaaat
attaatgtagttgctatctatggtggtgctagcattacagaccaagcaagacaaattaag
cgtggtgcacaaattatcgtagcgactcctggtcgtatgaaagatatgatgagccgtgga
ttagtagatatctctaaaattgactattgtgttttagatgaagctgatgaaatgcttaac
atgggattctttgaagatattaaagaaattctttctgatactcctaaagaaaaaagcaca
tggttattctctgctacaatgccaagagaagtagctacaatcgctaagaagtttatgcgt
agtccacaagaaattactgtgggaacaaaaaactcaggagcatcaacagtacaacatgag
tattatgtagtaagtggtcgcgatagataccctgccttaaaaagattagcagatactaat
cctgatattttctctgtaatcttctgtagaactaagagagatacacaaaaagtagcagaa
agtcttattgaagatggttacaatgctggtgcattacacggagatttaagtcaaaaccaa
agagatttggtcatgagctctttccgtaaaaaacaaatacaaatgttagttgcaacagat
gttgcggcacgtggtattgatgttgatgacattacacacgtaattaattatcaattgcca
gatgaaatagaaacctatacgcaccgtagtggtagaacaggtagagctggtaaatctggt
atctctatggtaattattaccagaagtgagcttcgaaaaataaaagcaatcgagaataaa
attggtcaaaaattcatcacaaaaaatattccttctggaatggaaatttgtgagatccaa
ttatatcacttagcaaacaaaataaaagatactgaagtaaacgaagaggttgaatcatat
ttacctgctatcaacgatgtctttaaagatatcgatagagaagaacttatcaagaaagta
gtttctgtagagttcacacgtttctttaactactacaacaaaactagagatttaaattct
ggaaactctgaccgaggagatagagaagaaagaggtagcaatactggtagtggtgaaata
cctactagtggttctgttcgttactttatcaatgttggagaaaaagacgaatatgactgg
atgtcacttaaagacttcttaagagatactctagaagtaggtcaagatgatatattcaaa
gtagacgttaaagagagtttttctttctttaataccgatgcagcgattactcctaaaatt
ttagagacttttaaagactttaaagtagatggtagatttgtaaacgttgagatttctagc
aacccaggtggtggcggaggtcgcggcggaagagatcgtaaccgcagtgccggtggtggc
ggtggtggcggtagccgcggaggaagagatcgtaaccgcggtggcggtggcggcggaggc
gacttcaaaaaacgtagatcttcatcttctagagatggtggctacggagggggttcttct
gaaggcggaggatctagaagaagatcatctgactctggttctagctcaagatctagctcc
cgtagtggaagtagagaatctagtagcggtagtaaaagcaaacgcagaagcggctttttc
tag
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