Cellulophaga baltica NN016038: M667_18690
Help
Entry
M667_18690 CDS
T03562
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M667_18690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbal03019
]
M667_18690
Enzymes [BR:
cbal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M667_18690
Messenger RNA biogenesis [BR:
cbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M667_18690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Utp25_C
SUa-2TM
Shikimate_DH
Cas3-like_C_2
Helicase_C_2
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AIY15027
LinkDB
All DBs
Position
4276830..4278119
Genome browser
AA seq
429 aa
AA seq
DB search
MTFKELGIAEPILKALASEGYENPTPIQEKSIPILLKGKDLLGVAQTGTGKTAAFGIPIL
HHLYTNNSGVGKRKIKALVVTPTRELAIQIGESFTAYARFTGIKNTVIFGGVKQGKQTDA
LRKGVEVLIATPGRLLDLMNQGFISLRDLEHVVLDEADQMLDMGFIHDVKKIIAKLPAKR
QSLFFSATMPKTIVELSQKILGEFEQVTIKPEQATAEKVEQAIYFVPKGDKAKLLVHLIE
EKDAKAVLVFSRTKHGANKIVKLLDKADIHAAAIHGNKSQTARQNALKDFKDGKLTVLVA
TDIAARGIDIDDLSLVVNYDLPNVPETYVHRIGRTGRANASGVALSFCDREERAYLKDIQ
KLIKQTIPTITDHPFKDDGSRPVEADTDDRPKRQGQQSRSRNSGQKPSNSNNRNKNRNHN
RNRSSDGPK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattagggattgcagaacctattttgaaagctttagcttcagaaggt
tacgaaaatcctactccaatacaagaaaaatcaattccgatattactaaaaggtaaagac
cttttaggcgttgcacaaacaggaactggaaaaacagcagccttcggtattcccatttta
catcacttatacaccaacaatagcggcgtaggtaaacgaaagataaaagccttagttgtt
actccaacgcgagaattagccatccaaattggcgagagttttacagcatatgcccgtttt
acaggtatcaaaaacaccgtaatttttggtggcgtaaagcaaggaaagcaaacagatgcc
ttacgtaaaggtgtagaagtactaattgctactcctggccgtttgttagatttaatgaac
caagggtttatttccttacgagatttggaacacgtagttttagatgaggcagatcaaatg
cttgatatgggatttatacacgatgtaaaaaaaatcatcgccaaattacccgcaaaacgt
cagtcgcttttcttttcggctaccatgcctaaaaccattgtagaattgtctcaaaaaata
ttgggagaatttgagcaggtaactattaaaccagaacaagctactgctgaaaaagtagag
caagctatttactttgtacctaaaggcgataaggctaaacttttagttcatttaattgaa
gaaaaagatgccaaagcggttttagtgttttctagaacaaaacatggtgcaaataaaatt
gttaaactactagacaaggcagacatccatgctgcggctatacacggtaataaatcacaa
acggcaagacaaaatgccttaaaagattttaaagacggtaaattaacggttctagtagct
accgatattgctgcccgtggtattgatattgatgatttatcattagtggtaaattatgat
ttaccaaatgtacctgaaacttatgtacaccgtattggtagaacgggtagagcaaatgct
agtggggtagctttatctttctgtgatagagaagaaagagcgtatttaaaagacatccaa
aagcttattaaacaaactattcctaccattacagatcatccttttaaagatgatggtagc
agacctgttgaagcagataccgatgatagaccaaagagacaaggacagcagagccgttct
agaaacagtggtcagaaaccaagtaattctaacaacagaaataaaaataggaaccacaat
agaaatcgttctagcgacggacctaaataa
DBGET
integrated database retrieval system
