Mycovorax composti: PIECOFPK_02176
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Entry
PIECOFPK_02176 CDS
T10380
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbam Mycovorax composti
Pathway
cbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PIECOFPK_02176 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbam03019
]
PIECOFPK_02176 (deaD)
03009 Ribosome biogenesis [BR:
cbam03009
]
PIECOFPK_02176 (deaD)
Enzymes [BR:
cbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PIECOFPK_02176 (deaD)
Messenger RNA biogenesis [BR:
cbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PIECOFPK_02176 (deaD)
Ribosome biogenesis [BR:
cbam03009
]
Prokaryotic type
rRNA helicases
PIECOFPK_02176 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SNF2-rel_dom
AAA_22
HPS6
YwpF
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WWC84439
LinkDB
All DBs
Position
complement(2548229..2549884)
Genome browser
AA seq
551 aa
AA seq
DB search
MTTFESLGLEADLLQSLETIGFVTPTPIQEKAIPVLLQGTKDFVGLAQTGTGKTAAFGLP
LLQLINKEQRSPQALVICPTRELCLQISADLERFSPAKKKVHVAAVYGGTSITQQIQQLR
KGVHIVVATPGRLIDLIERKAIHLENIHYVVLDEADEMLNMGFKDDIEFILKETINRHSM
WLFSATMPPEIRQVSKRYMDKPVEIAVGKVNSTNVNIDHQYFLTQHVNRYETLKRIIDFN
PGIYGIIFTRTKADAQHITEQLIREGYDIDALHGDLTQAQRDKVMARFREKSLQLLIATD
VAARGIDVQGITHVINYELPEDTEVYTHRSGRTGRAGRSGVSISIVTPKELYRLRQIEKL
VNTRFSRMDIPSGKDVCRKQFFYFIERLLSADISSGEYEAYLPALREKFADMEKEEILQR
VAALEFDRFLRYYENAADLNIRAQEREPRGTREKTIGRRSAGNYQRLFVNLGTKDGFYKA
SFLQFILDMSGLDKSVLGRIDMKEMNSWIEIEPQAAKKMIRALDGKNYRGRKIRMNDADS
GGGRGKGRRSA
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaatcgttaggacttgaagcagatctgctccagtctcttgaaaccatc
ggtttcgttactcccactcctatacaggaaaaagccatcccagttttattacaaggaaca
aaagattttgtgggactggcacagaccgggactggaaaaactgcagcttttggtttacca
ttattacaacttattaataaagaacagcgttcgccgcaagcgctggtgatatgccctaca
cgggaattgtgtttacagatctcggccgacttagaaagattcagtccggcaaagaagaag
gtacatgtagccgctgtatacggaggcacatccattacgcagcaaattcagcagctgagg
aaaggggtgcatatagtagtagccacacccggccgcctgattgatcttatagagcgtaaa
gccattcatctggaaaacattcattatgtagtactggatgaggctgatgaaatgctaaac
atgggttttaaggatgacatagaattcattcttaaggaaaccataaatcgtcacagtatg
tggcttttcagtgctactatgccgcctgaaatcaggcaggtaagtaagcgctatatggat
aaacccgtagaaattgctgtaggaaaagtaaattccaccaatgttaatatcgatcaccag
tatttcttgacacaacatgtcaatcgttacgaaactctgaaacggattatcgattttaac
ccgggcatttacgggattatcttcacccgcactaaggccgatgcgcagcatattactgag
cagttgattcgcgaagggtacgatatcgacgcgctacatggcgatctaacccaggcgcag
cgcgataaggtgatggcgcgttttagagaaaaatcgttgcaactgctgatcgctacagat
gtggctgcccgtggtattgatgtgcagggaattactcatgttatcaactacgagttgcct
gaggacaccgaagtatatacccaccgtagtggtcgtaccggacgcgcaggcagaagtggt
gtatcgatttccattgtaacacctaaggagctttatagattacggcagattgaaaaacta
gtaaatacccgcttttccagaatggatatcccttcgggaaaagatgtatgtcgcaagcag
ttcttctacttcattgagcgtttgctaagtgctgatatcagtagcggggagtatgaagct
tacctgccggcactgcgcgaaaaatttgccgacatggagaaggaggagattcttcagcgc
gtagcagcactggagtttgacagattccttagatattacgaaaatgccgccgacctgaac
atacgagcacaagagcgagaacctcgcggtacaagagaaaaaaccataggcagaagatcg
gctggtaattatcagcgcctgtttgtgaacctaggaactaaggatggtttttataaagcc
agtttcttacagtttattttagacatgagtgggctagataaaagcgtattgggacgcatc
gacatgaaagaaatgaacagctggatcgaaatagaacctcaggctgccaaaaagatgatt
cgtgctttggatggtaaaaattatcgtggacgcaagattcgtatgaacgacgcggatagt
ggtggaggcagaggtaaaggacgacgttctgcttaa
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