Petrocella atlantisensis: PATL70BA_0094
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Entry
PATL70BA_0094 CDS
T05737
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbar
Petrocella atlantisensis
Pathway
cbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PATL70BA_0094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbar03019
]
PATL70BA_0094
03009 Ribosome biogenesis [BR:
cbar03009
]
PATL70BA_0094
Enzymes [BR:
cbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PATL70BA_0094
Messenger RNA biogenesis [BR:
cbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PATL70BA_0094
Ribosome biogenesis [BR:
cbar03009
]
Prokaryotic type
rRNA helicases
PATL70BA_0094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
UMPH-1
Motif
Other DBs
NCBI-ProteinID:
VDN45933
UniProt:
A0A3P7P6F8
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All DBs
Position
1:87748..89448
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AA seq
566 aa
AA seq
DB search
MNNISELSLSDSIYKALRDMNFEQLTDIQELAIPILLEGKDLIGQSQTGTGKTAAFAIPL
LEKVDPVVKSPQAIILCPTRELAVQVANEFNKIGKYMRNIKTVAVYGGEPIYRQITQLKR
GAQIIIGTPGRTIDHINRGTIKLDDIHTMILDEADEMLKMGFREDIEMVLSNMDTANVQT
VLFSATMPQSIIDITKHYQKDPELIKVKSKLITADTITQQYLEVKRSHKIEAISRILEVD
KPNRCIVFCNTKSSVNDVCDALMLRNFPSDKIHGDLKQEMRMDVLKKFNNSQINVLVATD
VAARGLDIQNVDVVINYDVPDKADYYVHRIGRSGRAGKEGRAITLVSTGDRRLLRDITSY
TKTVIEKIAIPTNIEVNASKITDFIDELDEIIKGGDMHEYMTILNQIDTVHPLEEICAAL
IKKTLSLDENHHENDINFSVGDDKGRQRQSFGSNRDRGSRDRNDRGGDRGAGAPRNRKRD
DKDMVRMFFNVGNKDNLKPKHILGAIAGECNVKGSQIGAIDMLDKFTFVDVHKDIAKIVL
KKMEGNKINNKKVSVEIAKTSKEKSL
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgaataatatttcagaattaagtttatcagattcaatttacaaagcactcagagacatg
aatttcgaacaattaacagatattcaagagttagcaattcctatacttcttgaagggaaa
gaccttatcggtcaatcacaaacaggaacaggaaaaacagcggcctttgctattccatta
cttgaaaaagtagaccctgtggttaagagtcctcaagcaatcatcttatgtccaacaaga
gagttggctgtacaggttgcaaatgaatttaacaaaatcgggaagtacatgagaaatata
aaaacagttgctgtatatggtggagagccaatctacagacaaattacgcaacttaaaaga
ggggcacaaatcattataggaacccccggacgtaccatagaccatattaatcgaggtacc
attaagttagatgacattcatactatgattcttgatgaagccgatgaaatgcttaaaatg
ggctttagagaagatattgagatggttcttagtaacatggatacggccaatgtacaaacg
gttctattctctgcaacgatgcctcaaagtataattgatattactaaacattatcaaaaa
gaccctgaacttataaaagtaaagtctaagcttattacagcagatacaattacacaacaa
tatcttgaagtgaaaagaagtcataagattgaagctatttcaagaattttagaggttgac
aaaccaaaccgttgtattgttttttgtaatacaaagtcatccgtaaacgatgtgtgtgac
gccttaatgcttagaaactttccatccgataaaatccatggtgatcttaaacaagaaatg
cgtatggatgttcttaagaagtttaacaattctcaaatcaacgttctagttgcaacggat
gttgcagcacgtggacttgatatacagaatgtagatgtcgttatcaactatgatgtaccg
gacaaagcagattattatgtacatagaatcggtcgtagtggacgtgcaggtaaagagggt
cgtgcaataacccttgtgagcactggagatcgtcgacttctaagagatattacaagttat
actaagacggttatagaaaaaattgctattcctactaatatagaagtgaacgcttcaaag
atcaccgatttcattgatgaactcgatgagattataaaaggtggggacatgcatgaatat
atgaccatcttgaatcaaattgatacggttcatcctctagaggagatctgtgccgcttta
attaagaaaacattgtctctagatgagaatcatcatgagaacgacattaactttagtgtt
ggtgatgataaaggccgtcagcgtcaatccttcggcagtaacagagatcgtggtagtcgt
gatcgtaatgatcgtggtggtgatcgtggcgcaggtgcaccaagaaatcgtaaaagagat
gacaaagacatggttcgcatgttctttaatgtcggtaataaggataatctaaagccaaaa
catattcttggcgctatagcaggtgaatgtaatgttaaaggtagccaaatcggtgccatt
gatatgctagataagtttacttttgtagatgttcataaagatattgctaaaattgttctt
aagaagatggaaggcaataagattaataacaaaaaagtttctgttgaaattgctaagact
tcaaaagaaaaaagtttataa
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