Petrocella atlantisensis: PATL70BA_2202
Help
Entry
PATL70BA_2202 CDS
T05737
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbar
Petrocella atlantisensis
Pathway
cbar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PATL70BA_2202 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbar03400
]
PATL70BA_2202 (mfd)
Enzymes [BR:
cbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PATL70BA_2202 (mfd)
DNA repair and recombination proteins [BR:
cbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PATL70BA_2202 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
Ntox24
Filo_VP35
UB2H
Motif
Other DBs
NCBI-ProteinID:
VDN48091
UniProt:
A0A3P7PY55
LinkDB
All DBs
Position
1:2220687..2224187
Genome browser
AA seq
1166 aa
AA seq
DB search
MNILNQPLEKLEAFHIAKEKLKYKETPIAIYGAIDSQKCHLVSALSDHPQKLIITYNDVR
AREIYEDMMFFQEDVYIYPSKDIIFYSADVHSNDIVKERMRLFKQLIEQQKAVVVMSADA
LVDTLMPLDSIRESIIFCKQGEVLEMTGLGKRLIYMGYKRTEQVESRGQFTIRGGIIDIF
PLTETEMVRIELWGDEIDSIRQVNMETQRSTIALEEVAIYPAREVVVSDASIHRAEKAVQ
KDYDKTKKYFLKGDPQYLERLERSFDDLIHKIKGEGNFNGIEGNLLYYEDAVASILDYFQ
EPVIYLDEPQRIKERLTNLFSEFNESMRSRYEKGYLLKDQVDVLFKEGQIIKKIENHAVV
SLSTLNHKDALVHNTSKIEMLVRSVNPYHGSFELMIKDIKSWAENHYKILLLCASKTRAT
HMVELLKEQDIKAYTLYNTEMGLTSGSVAVSYGSMHKGFEYPHIQLVVLTETELVGKKQH
KRPKKFKGGKKLSHFNELKQGDYVVHENHGVGVFKGIEKIEVDGIGKDFIKISYKDDGNL
YIATTQLDAIQKYIGAEGKKPKLNKLGTGEWKATKERVKGAVEEIAKDLVALYAKREMAK
GYRYDKDTVWQNEFEEMFPYEETDDQLTAIEDTKRDMESSRIMDRLICGDVGYGKTEVAI
RAAFKAIQENKQVAYLVPTTILAQQQYNNFVQRMKDFPVKVEMLSRFRTAKEQKKIIEGL
RRGLIDVVIGTHRLVSKDVVFKDLGLLIVDEEQRFGVKHKEAIKSMKETVDVLTLTATPI
PRTLHMSLIGIRDMSVLEDPPEERHPIQTYVLEHNEALIKDAIYRELARGGQVYYVYNRV
KEIDEVANQIAKEVPEASVAYAHGQMSERELENIMFDFINGNIDVLVATTIIETGLDISN
VNTMIIHNADRMGLSQLYQLRGRVGRSNRVAYAYLMYKRDKVLKEIAEKRLEAIREFTEF
GAGFKIAMRDLEIRGAGNLLGAKQHGHMDAVGYDLYCKLLEKEVRKLKNDLDTEESFETL
IDINVDAYIPVTYIKDEVRKIEAYKKIATIESEADYLDIQDELMDRFGELPKPVMNLLEI
GYIKGLAHDIGILAIMDKGDTCVFEIKKDAKINPSGIPDLIKSYGRSLKFAIVDQPYFEL
KMPGEGKKEVFRHIKTLLQALKGLKV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaatatattgaatcagcctttggaaaagctggaagcttttcatatagcaaaagaaaaa
cttaaatataaagaaacacctattgccatctatggcgccattgattctcaaaagtgtcac
ttggtatcagcactatccgaccatccccagaagctgatcattacttataatgacgttaga
gccagggaaatttatgaagatatgatgttttttcaggaggatgtctatatttatccctca
aaagacattattttttatagtgcagatgtacatagtaatgatattgttaaggaacgaatg
cgtctttttaaacaattgattgaacaacaaaaagcagttgtagttatgtcagcagatgca
ttggttgatacccttatgcctttagatagcataagggaaagtatcattttctgtaaacaa
ggtgaagtgctagagatgacgggccttggcaagcgcctgatttatatggggtacaaaaga
acagagcaagtagaaagccgaggtcaatttaccatccgtggcggcattattgacatcttc
cctttgacggagactgaaatggtgcgtattgaactatggggtgacgagattgactctata
cgacaggtcaatatggagactcaaagatcaacaattgctttggaagaagtggcaatctat
cctgctagagaagttgtggtatccgatgcttcaatacatagagctgaaaaagccgttcaa
aaggattatgataagacaaaaaaatattttttaaaaggcgatccccagtatttagaacga
ttggagcgtagctttgatgatttgatacataaaataaaaggagaaggcaactttaatggt
atagaaggaaatttactttattatgaagacgcggtcgcttctatattagattatttccaa
gagcctgttatatatttagatgagccccaaaggatcaaggaaagactgaccaatcttttt
tcggaatttaatgaaagtatgcgtagccgctatgaaaaaggatatctattaaaagaccaa
gtggatgtactttttaaagaaggacagattattaagaaaattgaaaaccatgcggtggtg
agtcttagtactttaaatcataaggatgcccttgttcataatacctcaaagatagagatg
ctggtacgatcggttaatccctatcatggtagttttgagcttatgattaaggatataaaa
agctgggctgaaaatcattataagattctcttgctgtgcgcctcaaaaaccagagccacc
catatggtggaattattaaaagaacaagatattaaagcttataccctttataacactgaa
atgggtcttacaagtggttctgttgctgtgtcctatggttccatgcataaaggctttgaa
taccctcatattcagcttgtggtgctaacggaaaccgaattggtaggaaaaaaacaacac
aaacgacctaagaagttcaaaggcggaaaaaaactaagtcattttaatgaattaaaacaa
ggggactatgtggtacatgagaatcatggtgtcggcgttttcaaagggatagaaaaaatt
gaagtagatggtatcggaaaagatttcattaagatttcttataaagatgatggcaatcta
tatattgccacaacacagttggatgctattcaaaaatacattggtgcagaaggtaaaaag
cctaagttgaataagcttggtaccggtgaatggaaagcgacaaaggaaagggtcaaaggt
gccgtagaagagattgccaaagatctcgtagccctatatgcgaaaagggaaatggcaaaa
ggctatcggtatgataaggacacagtatggcaaaatgaatttgaagagatgtttccatat
gaggaaacagatgatcagcttacggctattgaagacacaaaaagggatatggagagttct
agaattatggatcgcctaatttgtggtgatgtcggttatggtaaaactgaggtggccatt
agagctgcttttaaagcgatacaagaaaataagcaagttgcctatttggtgcccaccact
attttggcacaacagcaatataataatttcgtacaaagaatgaaagattttccggttaaa
gtggaaatgctttccagatttagaaccgcaaaagaacagaaaaaaatcattgagggactt
agacgaggtttaattgatgtggttatcggtacccatagacttgtttccaaggatgtcgtt
tttaaagatttggggttgttgattgtagatgaggaacagcgtttcggtgttaaacataaa
gaagcaatcaaatccatgaaagagacggtagacgtactaacactgacagcaacacccatc
cctagaacccttcatatgagtttgattggcatcagagatatgagcgttcttgaagatcca
ccggaagaacgtcaccctattcaaacctatgttttggaacataatgaagcccttataaag
gatgctatatatagagaattggctagaggcgggcaggtttattatgtctataatcgggta
aaagagattgacgaagttgccaatcagatagccaaggaggtccctgaagccagtgtggct
tatgcccatggacaaatgagtgaaagagaacttgaaaatatcatgtttgattttattaat
ggcaacatcgatgtcttagtggccaccaccattattgaaacaggacttgatatatcaaac
gttaatactatgattatacataatgcagatcgaatgggcttatctcagctttatcagcta
agagggagggtcggaaggtccaatcgcgtggcttatgcgtatctcatgtacaaacgagat
aaagtgcttaaggaaatagcagaaaaaagactggaagccatacgtgagtttactgaattc
ggtgccggtttcaagattgccatgcgagatttggaaataagaggggcaggaaacctgctt
ggcgctaaacaacatggtcatatggatgctgtagggtacgatctttactgtaaactttta
gaaaaagaagtccgaaaactaaaaaatgacctagataccgaagaaagttttgagacgctt
atagatatcaatgtggacgcctatatacctgtcacttatatcaaggacgaggttaggaaa
atagaagcctataaaaaaattgcaaccatagaatcggaagcagactacctcgatatacaa
gatgaactcatggaccgttttggtgaattgccgaagccggttatgaatttactggagatt
ggctatatcaagggattggctcatgatattggaattttggcgattatggataaaggcgac
acatgtgtctttgagattaaaaaagatgcaaaaattaatccgtcaggtataccggatttg
attaagtcttatgggcgctcattaaaatttgccatagtagaccaaccctattttgaactt
aagatgccgggagaaggtaaaaaggaagttttcagacatattaagactttgttacaagct
ctaaagggtttgaaggtttaa
DBGET
integrated database retrieval system
