Petrocella atlantisensis: PATL70BA_2482
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Entry
PATL70BA_2482 CDS
T05737
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbar
Petrocella atlantisensis
Pathway
cbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PATL70BA_2482 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbar03019
]
PATL70BA_2482 (dbpA)
03009 Ribosome biogenesis [BR:
cbar03009
]
PATL70BA_2482 (dbpA)
Enzymes [BR:
cbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PATL70BA_2482 (dbpA)
Messenger RNA biogenesis [BR:
cbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PATL70BA_2482 (dbpA)
Ribosome biogenesis [BR:
cbar03009
]
Prokaryotic type
rRNA helicases
PATL70BA_2482 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UTP25_NTPase-like
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VDN48378
UniProt:
A0A3P7PHL3
LinkDB
All DBs
Position
1:2533529..2534974
Genome browser
AA seq
481 aa
AA seq
DB search
MRDTIKNEFSKMYGIGDDIGRALDVLGYNQPLAVQDRVMPHILEGKDLIVQSQTGSGKTA
AFGIPIAEKLEMDENLPQVLVLTPTRELAVQVCEEIASIGRYKKIRCLPIYGKQPIHIQL
RQLKQRVHVVVGTPGRLGDLIKRKHLVLEQIKYLVIDEADEMLKRGFLEDVEAIIKRIPK
ERTTLLFSATMPPEIEFICSEHMMNPLRIEMASTQAPIDQIKQVWYEVSDDWKFMLLTKL
MEELKPRSCLIFCNTRIKADQLVQKLIKGKYDCMALHGGMAQKDRLRAISTFKDGEVTYL
IATDLAARGIHVDSLDLVVNYNVPMDNENYVHRIGRTGRVGEEGRAITFVSTHDQRKWDE
IQTFIGYKVPLEDEKILQQKAISKRTGASTKPKSKREKKDQLHKDITRLRINAGKKKKMR
AGDVLGAISNLPGLTSEDIGIIDIQDSCTYVEIFNHKGQLVEEGLSKVKVKGRDVKIKKV
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagagacaccataaaaaatgaattcagtaagatgtatggaattggcgatgatattggc
agggcattagatgtacttggttataatcagcctttggccgttcaagatagggttatgcct
catatccttgagggaaaagatctaattgtacaatctcagacaggaagtggaaagacagcg
gcttttggtattcctatagcagagaagttggagatggatgagaacctaccacaggtactg
gtgctcacgcctacaagagagcttgcggttcaagtgtgtgaagagattgcaagtattggc
agatataagaaaatacgatgcctgccaatctatggtaagcaaccgatacatattcaactt
agacaattaaaacaacgtgttcatgtagtcgtcggaacgccagggcgcctaggtgatttg
attaagagaaagcatcttgtgttggaacaaattaagtatttagtgattgatgaagcagat
gaaatgctgaaacgaggttttcttgaagatgtagaggcgattattaagagaatacctaag
gaacgcacaacgcttcttttttctgctactatgccacctgagatagagttcatatgctct
gaacatatgatgaatcctttgcgtattgagatggcatcgacgcaagcacccattgatcag
attaaacaagtctggtatgaggtatcagatgattggaaattcatgctcttgacaaagttg
atggaggaactaaagcctaggagttgtttgattttttgtaacacaagaatcaaagcggat
caattggtccagaagctgattaaaggtaagtatgattgtatggctcttcatggtggtatg
gctcaaaaagatcgactaagagcaatctcaacttttaaggatggagaggtcacatatttg
atagctacggatttggcagctagagggattcacgtggatagccttgacctagtggtaaac
tataatgtacccatggacaatgaaaattatgttcatagaataggtcgaacaggacgtgtt
ggtgaagaaggccgtgccattacatttgtttctacacatgatcaaagaaagtgggatgaa
atacaaacttttattgggtataaagttccattagaagatgagaagatattacaacaaaag
gcaatttcaaagagaacaggagcatcgactaagccaaagtcaaaaagagaaaagaaagat
cagcttcataaggatattactaggctacgtatcaatgccggaaagaagaaaaagatgcgc
gccggtgatgtactgggcgcaatcagtaatctacctgggcttacatctgaagatatcggt
atcattgacattcaagactcttgtacctatgtggagatttttaatcataaaggtcaattg
gtggaagaaggactaagcaaggttaaagtcaagggcagggacgttaagattaagaaagtc
aagtaa
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