Cryptococcus bacillisporus: 91982025
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Entry
91982025 CDS
T11001
Symbol
I312_101977
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cbas Cryptococcus bacillisporus
Pathway
cbas03013
Nucleocytoplasmic transport
cbas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cbas00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
91982025 (I312_101977)
03015 mRNA surveillance pathway
91982025 (I312_101977)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbas03019
]
91982025 (I312_101977)
Enzymes [BR:
cbas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
91982025 (I312_101977)
5.6.2.5 RNA 5'-3' helicase
91982025 (I312_101977)
Messenger RNA biogenesis [BR:
cbas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
91982025 (I312_101977)
mRNA cycle factors
Common to processing body (P body) and stress granule
91982025 (I312_101977)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
NPHP3_N
DEAD
AAA_22
Helicase_RecD
AAA_16
nSTAND3
PhoH
ATPase
AAA_25
Ribosomal_S13_N
T2SSE
Motif
Other DBs
NCBI-GeneID:
91982025
NCBI-ProteinID:
XP_066605930
LinkDB
All DBs
Position
3:join(911530..911562,911637..911854,911910..911946,912002..912140,912190..912271,912321..912575,912626..912960,913013..913179,913234..913843,913906..914615,914682..914859,914917..915083,915135..915431)
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AA seq
1075 aa
AA seq
DB search
MEFSNFEGASQYGPDIDDNTSLYSSIPPSVVTAPTISGDIASQGDLHLGETTSGHAAVGQ
GYIDDFDEEIERNSFGEGVEHACSYCGIHNPQCVVKCLHCNKWFCNSRGNTSASHIVNHL
VKAKHKEVILHKESALGDTIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAALTSSR
DINWDTSQWSAIIDDRQFLSWLVKVPSEAEQLRARQISLAQISKLEELWRENPNAKLEDA
EAQSGEEEMQPILLKYEDAYQYQNILGPLVKIEADYDKRMKESQTENDITIRWDMGLNQK
RLAWFCMPKLESGEVRLAVGDELKLKFAGTTNSVGIKGLQAFNKGGWGSSGDAVWEGVGS
VVKIPNNASDEICLELRRNDGVPFDCTHGFSVDFIWKSTSFDRMQAAMKTFAIDEKSVSG
YIYHKLLGHEVEPQVLRTQMPKRFAAPNLPELNHSQMSAVKAVLQKPLSLIQGPPGTGKT
VTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHQTGLKVVRLAAKSREALDSSVDFL
SLHSQVANADTHHELQKLIQLRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCVG
AGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARAG
LSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKNVDFPW
PVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPNQIGVITPYEGQ
RSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRM
NVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKGCFVEGPLSNLQPSMVQFSRPKKS
LAAAMDPFKRRETSAAEFLSKNVGHGHGQGQSSATSRFDPAYYRTHNPLSFIPPDAQSVV
SQALTSSAFPLFGGGGGNKTYTGYASSVISQQPIDGGNAHGHDHLPPRVAGQSQFDRFAN
VGGDNMMGMGMGMGKGRRLSIGSEAASASMYAYGYKAGEDDTQSIAPSQAGMTEF
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggagttttccaactttgaaggggcatcacagtacggtccagacatcgatgacaacact
tcattatactcgtcaatcccgccttcagtagtgacagcgccaactatcagtggcgatatt
gctagtcaaggcgaccttcatctcggcgagactacgtcggggcatgcagcagtcggtcaa
ggctatattgacgactttgacgaagaaatagagcgaaattcattcggagaaggggtagag
cacgcttgcagctactgtggtattcataatccccaatgtgttgtaaagtgtcttcactgt
aataagtggttctgcaattctcgtggcaatacatctgcctcgcatatcgtaaaccatttg
gtcaaggcgaagcacaaagaagtgatactacacaaggaaagcgctcttggagataccatc
ccggaatgctacaactgtggcagtaaaaatgtgtttatgctaggatttatccccgcgaaa
agtgatactgtcgttgttttactctgccggcaaccttgtgcagctctgacaagctcccgg
gatatcaactgggatacctctcagtggtcagccatcattgatgatcgtcaatttctctcc
tggctcgtcaaggtaccatcagaggctgagcagcttcgagcgaggcaaatttctttagcc
cagatatcaaaacttgaagaactttggagagaaaatcccaatgcaaaacttgaggatgcg
gaggctcagtctggtgaggaggagatgcaaccgatcttgctcaaatatgaggacgcgtat
caatatcagaacattcttgggcctctagtcaagattgaagctgattatgacaagcgcatg
aaagaatcacaaactgagaatgatatcacgatacgatgggatatgggtctcaatcaaaag
cgtcttgcttggttttgcatgccgaagctagaaagcggagaggtgagattggcggtaggt
gacgagctgaagctcaaatttgcggggacgaccaacagcgtcgggatcaagggtctccag
gcgttcaacaaagggggttggggaagttctggggatgctgtgtgggagggagttggtagc
gtcgtcaagataccgaacaatgcatcggacgaaatctgcttggagcttcgaaggaacgac
ggagtgccttttgactgcactcatggcttctctgtcgactttatctggaaatcaaccagt
ttcgacaggatgcaggcagccatgaaaacgtttgccattgacgagaagagtgtcagcggc
tatatctatcataaactgctcggacacgaagttgaaccccaagtactgcgtacccaaatg
cccaaacgttttgctgcacctaatcttccggagctcaaccactcgcaaatgtctgccgtc
aaggccgtattgcaaaaacctctgagtctcatccaaggccctccaggtaccggaaaaacg
gtaacttctgcttctatcgtgtatcacctcgccaagatgaaccctggtcaggttttggta
tgcgcgccttccaacgtagctgttgatcatctttgcgaaaagattcaccagacgggtctc
aaggtcgtacgattagcagccaaatcacgagaagcgctcgattcatcggttgatttcctt
tccctccacagtcaagtagccaatgcggacacacaccacgagttgcagaaactcatccaa
ctgagaaatgaccaaggcgaattaagtcagagcgacgaaagaaagtataaagcattggtc
aaagcgtgtgaaaaggacattttgaacgcggcagatgttatttgcactacatgtgtcggt
gctggcgatcccaggttggccaagtttaaatttagaacagttttgatcgatgaagccact
caatctgccgagcctgaatgtatgatccctcttgttatggggtgtaagcaagctgtgctt
gtaggagatcaccagcaattgggacctgttattatgaacaagaaagcagctcgagctggt
ctttcccaatcgctgtttgaacgactcgtcatcctgggcaaccaccctatccgactgcaa
gtgcaataccggatgcacccctgcctttccgagttttcatccaacttgttttacgagggc
actttgcagaatggtgtcacggcgccagaaaggctgcgtaagaatgtagatttcccctgg
ccagttgcggacactcccatgttcttccatcagaaccttggtacggaggaaatatcatcc
agcggaacatctttcctcaacagaacggaagcttccaatgttgaaaagatggtgaccaag
tttttcaagtctggtgtcttgcccaatcaaattggtgtcattacgccttatgaaggacag
cgatcatacattgcgtcgtacatgcagctgcacggctcgctgaaaaaggatctgtacaaa
gaggtcgaggtagcgagtgtggatgcgttccagggacgtgagaaggattatatcattttg
agttgtgtgaggagcaatgagcaccagggtattggatttttaaatgatcctcgaaggatg
aacgtggctcttacccgtgccaagtacggcgtcgtgatattgggtaatccaaaggtgttg
agcaagcaccctctttggctttacctcctttctcactacaaggagaagggatgctttgtt
gaaggtcctctcagtaaccttcagccgagtatggtccagttcagccgaccgaaaaaatct
ttagcggcggctatggaccctttcaagcggcgtgaaacttctgctgctgaatttctcagc
aagaatgtcggccatggacatggacaaggacaatcatccgccacgagccgtttcgaccct
gcgtattaccgcacccataacccactttcatttattccgcctgatgcccagtcggttgtc
agccaagcattgaccagctctgctttcccattattcggcggtggtggtggcaacaagacg
tatacgggttacgcatcaagtgtgatctctcaacaacccatcgacggcggaaacgcccac
ggccacgaccatttacctcctagggtagcaggccaatcacaatttgacaggtttgccaat
gtcggtggggacaacatgatggggatggggatggggatggggaaggggaggcggctttcg
atcgggagcgaagcggcaagcgcgtcaatgtatgcgtacggttacaaggcgggcgaagat
gatacgcagagtatcgcaccgagccaggctggaatgaccgagttttag
DBGET
integrated database retrieval system
