Cryptococcus bacillisporus: 91983563
Help
Entry
91983563 CDS
T11001
Symbol
I312_103518
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cbas Cryptococcus bacillisporus
Pathway
cbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
91983563 (I312_103518)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbas03019
]
91983563 (I312_103518)
03041 Spliceosome [BR:
cbas03041
]
91983563 (I312_103518)
03009 Ribosome biogenesis [BR:
cbas03009
]
91983563 (I312_103518)
03016 Transfer RNA biogenesis [BR:
cbas03016
]
91983563 (I312_103518)
Enzymes [BR:
cbas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
91983563 (I312_103518)
Messenger RNA biogenesis [BR:
cbas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
91983563 (I312_103518)
Spliceosome [BR:
cbas03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
91983563 (I312_103518)
Complex C
U4/U6.U5 tri-SnRNP related factors
91983563 (I312_103518)
Ribosome biogenesis [BR:
cbas03009
]
Eukaryotic type
Pre-60S particles
Helicases
91983563 (I312_103518)
Transfer RNA biogenesis [BR:
cbas03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
91983563 (I312_103518)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
91983563
NCBI-ProteinID:
XP_066607443
LinkDB
All DBs
Position
5:join(1155265..1155603,1155659..1155913,1155968..1156172,1156223..1157016,1157077..1157341,1157403..1158568,1158631..1158800,1158860..1158872)
Genome browser
AA seq
1068 aa
AA seq
DB search
MSSSAPSDSPLPASNLGVKQKKRSSKDKSGTPSPRPNKAARLDQEDGADDHMDVLEKGKD
GQPRDPMEALEAVAMPKVEDEYEVQAEREVDAAKDFADVTAPGQEAKLKLVHQVRHQVAI
PPDYPYIPINQHKRKDPPARTYKFELDPFQFVSTSCIERNESVLVSAHTSAGKTVVAEFA
IATCLKEGRRVVYTSPIKALSNQKFREFTETFGDVGLMTGDVTINPEASCLVMTTEILRS
MLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNSMEFAE
WICATHQQPCHVVYTDFRPTPLQHYLFPAGSEGIYLVVDEKSNFRDDNFQKAMAALAQGQ
GEDPANPSGGKGKKGKTKKGGALKGETSDIYKIVQLIMRRNLNPVIIFAFSKRECEDLAM
QMQKFDFNTPDEAATVAQVFESAIGSLSEDDKKLSQIEGILPLLKRGIGIHHGGLLPILK
EVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTSVRKFDGKDFRNLSGGEYIQMSGRA
GRRGLDARGIVIMMCDEKIEPEAAKGMVKGQADRLDSAFHLGYNMIINLMRVEGVSPEYM
LERCFFQFQNSMSVPVLEKQLKEAEAERDAIVIEREDEIEEYYDLRQQLKERGQDFQAVI
THPAYCLRFLQAGRLVEIRDGDKDFGWGVVVAFNKVVNQRGRPPIWTDQDPPQKQYIVDV
LTRIESGASIPRDRSASEISPPSGADKGEVAIIACSLSTVQSISQYRVNLPKDLRGQQEK
NTAFRAVNEIKKRMPDGPPLLDPIKSMGISDKSFVDLVKKIALLENRLQSLEITKSPELP
RLYDLYDRKQKSIQSVKSLKRRINSVHDILQLEELKSRKRVLRRLGFTTADDVVEMKGRV
ACEISTGDELMLTEMMFGGTFNTLAPEQCAALLSCFVFQEKSEAKVRLKEELAVPLRTLQ
ETAKGIAKVSNESGIAIVEDEYVQSFKVEMMDVVLQWCKGAKFSQICEMTDVFEGSIIRC
FRRLQELIRQMGQAAHAIGNTELEEKFSKSMELLERPNTVVFNPSLYL
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcctccgctccaagcgactcgcccctcccggctagtaaccttggcgtgaaacaa
aaaaagagatcctcaaaagacaagagcggtactccatcccctcggcccaataaggctgct
cgtctcgatcaagaggatggcgcagacgatcatatggacgtattggagaaagggaaggat
ggacaaccgagagatcccatggaagcgttagaagcggtagcaatgcccaaagtcgaagat
gagtatgaagttcaagctgaaagagaggtggacgctgcaaaggactttgccgatgttact
gctccaggacaggaggccaagttgaagcttgtacaccaggtccgacaccaggttgctatt
cctcctgattatccctacatccctatcaatcaacacaagcgcaaagatccgccagcccgt
acctacaaatttgagttggaccctttccagtttgtgtctacttcctgtattgagagaaat
gagtctgtccttgtatccgctcacacttcggctggtaagacggtggtggctgagtttgct
attgcgacatgtttgaaggaagggaggcgagtggtatatacaagtcctatcaaggctttg
tcgaaccaaaaattcagagaatttacagagacattcggtgacgttggactcatgaccggt
gatgtgactatcaacccagaagcgtcatgtctggttatgaccactgaaattttgcgctct
atgctataccgcggttcagaagtcatgcgtgaggttgcttgggtcatttttgatgaggtt
cattacatgcgagacaaggaacgtggtgtcgtctgggaagagaccatcattcttcttccg
cattctgttcgctacgtcttcctctcagccaccatccccaactctatggaatttgcagaa
tggatctgcgcaacgcaccaacagccttgccatgtcgtttataccgatttccgaccgact
cccctccagcactaccttttcccagctgggtcagaaggcatatatctagtggtggatgag
aagagcaacttcagggacgataatttccaaaaagcaatggcagccttagcgcagggtcaa
ggagaagatccggccaatcctagtggcggaaagggcaagaagggcaagaccaagaaaggc
ggtgcattaaaaggcgaaacatccgacatttataaaatcgttcaactcatcatgcgacgt
aacctcaatcccgtcatcattttcgcgttttcaaaacgtgaatgtgaagatcttgctatg
caaatgcagaaattcgatttcaacacgccggatgaagcggctactgtcgcacaggtgttt
gaaagcgctatcggttccttatcagaggacgacaaaaaactttcgcaaatcgagggcata
ttgcctttgcttaagaggggcattggaattcaccatggcggattgttgcctattcttaag
gaagtgatagagattttgttccaggaaggtctgataaaagctttgttcgcgactgagacc
ttttcgatcggtttaaacatgcccgccaagacagtcgtattcacaagtgtgcgcaaattt
gatggtaaagatttcagaaacctttctggcggtgaatatatccagatgtctggacgtgcc
ggtcgtcgtggtctcgatgcgcggggtatcgtcatcatgatgtgtgatgaaaaaattgaa
cccgaggcagcgaagggcatggttaagggccaagcggaccgtttggattcagctttccat
cttggatacaacatgatcattaatttgatgagagttgaaggtgtcagtcccgagtacatg
ctggaaagatgtttcttccagttccagaattctatgagtgtaccagttttggagaaacag
ttgaaagaggctgaggccgagagggacgccatcgtgattgagcgcgaagatgaaatcgaa
gagtactacgatctccgacaacaactcaaagagcgtgggcaagatttccaggctgtcatc
acacaccctgcgtactgtctacgtttccttcaggctggtaggctcgtagaaatccgcgac
ggcgacaaggatttcggctggggtgttgtcgttgcattcaacaaagtcgtgaatcaaaga
ggtcgacccccgatttggaccgaccaggatccgcctcagaagcagtatattgttgacgtg
cttactcgtattgaatcaggagcatccatccctcgagaccgatcggcctctgaaatttcc
cccccttctggcgcggacaagggcgaggttgccatcattgcatgttctctctctactgtt
cagtccatcagtcaataccgagtcaaccttccaaaggacttgcgcggtcagcaagagaag
aacaccgccttcagggcagtcaatgagatcaagaagcgtatgccagatggaccgcctttg
ctcgacccaataaagagtatgggcatttcagataaatcatttgtcgatttagtcaagaag
attgcactactggaaaaccgattacagtctctcgaaatcacaaaatctcctgagcttccc
cgcctctatgacctctacgaccgaaaacaaaagagcatccagtctgtcaaatccttaaaa
cgccgcattaattctgtgcatgatatccttcaattggaagagctcaagtctcgtaaacga
gtgctgagaaggttgggtttcacaactgccgatgacgtggtggagatgaaggggcgtgtg
gcgtgcgagatttccacgggagatgagttgatgttgaccgagatgatgtttggaggcaca
tttaatacactagcacccgagcagtgtgcggcattgctgagctgtttcgtctttcaagaa
aaatctgaggcaaaggtgaggttaaaggaggaactcgctgtcccgcttcgcactctccaa
gagacagccaagggaatagccaaggtgtcaaacgaatcaggtattgcgattgttgaagat
gagtatgtacagagcttcaaggtggaaatgatggatgtggttttgcaatggtgcaaaggt
gccaaattctcccagatctgtgaaatgaccgacgtctttgaagggtccattatacgatgc
tttagacgattacaagaactcattcggcaaatgggacaagccgcacatgcgatcggtaac
acggagctggaagaaaagttttcaaagagtatggagcttcttgaaaggcccaacactgtc
gttttcaacccttcattgtacttgtaa
DBGET
integrated database retrieval system
