Cryptococcus bacillisporus: 91983900
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Entry
91983900 CDS
T11001
Symbol
I312_103855
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cbas Cryptococcus bacillisporus
Pathway
cbas03008
Ribosome biogenesis in eukaryotes
cbas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbas00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
91983900 (I312_103855)
09123 Folding, sorting and degradation
03018 RNA degradation
91983900 (I312_103855)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbas03021
]
91983900 (I312_103855)
03019 Messenger RNA biogenesis [BR:
cbas03019
]
91983900 (I312_103855)
03009 Ribosome biogenesis [BR:
cbas03009
]
91983900 (I312_103855)
03016 Transfer RNA biogenesis [BR:
cbas03016
]
91983900 (I312_103855)
Transcription machinery [BR:
cbas03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
91983900 (I312_103855)
Messenger RNA biogenesis [BR:
cbas03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
91983900 (I312_103855)
Ribosome biogenesis [BR:
cbas03009
]
Eukaryotic type
Pre-60S particles
RNases
91983900 (I312_103855)
Transfer RNA biogenesis [BR:
cbas03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
91983900 (I312_103855)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
91983900
NCBI-ProteinID:
XP_066607777
LinkDB
All DBs
Position
6:join(516184..516186,516234..516402,516457..516606,516657..518490,518540..518743,518793..519105,519167..519728,519792..519955)
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AA seq
1132 aa
AA seq
DB search
MGVPALFRWLSKKYPKIVERVKEDTPKKIRGPDGEIVEEPIRYENPNPNGFEVDNLYLDM
NGIVHPCTHPEGRPAPETEEEMMVEIFKYTERVVNMCRPRKVLMMAIDGVAPRAKMNQQR
SRRFRAAQEAADKEEERKEAVKLFEAMGHTVSEETANRKSWDTNAITPGTPFMDLLSISL
KYWVSYKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVIYGLDA
DLIMLSLATHEPHFRVLREDVFAQSSKGPPACKNCGKVGHIAANCKGDKKVKDPNVVEVA
KTEDPKPFIFLDVACLREYLAIELVVPGVPFPFDLELAIDDWIFMIFFVGNDFLPHLPSL
EIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIFQKRKDDEER
QEHSQKRRKIEEHKRQDEDKAREEGRNALTLNGTEYVAVDNPAATARGGPLHPSLPSRPA
FDLVPKEEVAKPDDQQQRAKKAMAGSNSDIVKNRKAIRMANMSAAQALKAELEGSDDVNI
GDKKAIAQEGKEEDEAVVTVERTEDEEKEQLTKEEARGILEEQGEKEGVDEEIVPPAIQT
DEDEGGAPVGDATMAENDDSVTTNDDEDPTHIPRKRKRGDSDGDKESNEEDEDDDEDDDD
DAPPNPEADQPIPKKKLKVNADGTVDYEDDIKLWEPGYRERYYEKKFGVKLSEREFIDKV
TKSYMEGLCWVLEYYYQGVPAWDWFYPYHYAPFAQDFRNVGSMDIKFETSMPFKPFAQLL
GVFPAASRIHLPEPLQTLMIDEDSPILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLL
TALKSKEELLSDDEKRRNSWGDNVMFIANENPLYDLFCDKLYGLRAKDVSKPIPIDTKAS
YGMTGSVLPDPNCVPASTFDTPIPSIFECPDLNPNDSISVRYYFPRQAHPHRSILLRGYR
PEPARLTESDKDWVRRGGQGGRRGHRQSGNGNGNVTGGPGMARGRYESGPPRTNGYQQPP
PRSNYGGSSGYGYGAPAPLPSRPPISSYGGGAGGYGYGNPYAAAPNPYAGGYGAPAPYAA
GGHGQRPYVPPLPPPNPYSAPPPTYGRPPAGGYGYGAPPPRGAGYNPYTSRR
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagctctcttccgatggctttctaagaagtaccccaagatcgtcgagcga
gttaaagaggacactccaaagaagatcagaggcccagatggcgaaattgttgaggagccg
ataagatatgaaaatcccaatcctaacgggttcgaggtggataacctttatctggatatg
aacggtatcgtgcatccctgtacgcaccccgaaggccgaccggcaccagagacagaagag
gaaatgatggtggagattttcaagtatactgaaagggtagtcaacatgtgcaggccgaga
aaagtcttgatgatggctatcgatggtgtcgctcctcgagccaagatgaatcaacagcgt
tctcgtcgattcagggccgcccaagaagccgcagacaaggaagaagagaggaaagaggct
gtcaaattgtttgaagccatgggccacaccgtttcagaagagacagccaaccgcaagagc
tgggataccaacgcaatcacccctggtacaccattcatggaccttctctcaatatcacta
aaatattgggtgtcctacaagctcacaactgatcctggatggaaagacctcaaaatcatc
ctttctgactcatccgttcccggtgagggtgagcacaagatcatggactggattcgtcgt
cagcgaagctatcccacatgggacgccaacacgtcacatgtcatctacggattggacgct
gatttgattatgctttcacttgctacccacgagcctcacttccgggttcttcgagaagac
gtcttcgcacaaagttctaaggggcctcctgcttgcaaaaactgtggcaaagttggtcat
atcgctgcgaactgtaagggcgataaaaaggtcaaagatcccaatgtcgtcgaagttgct
aaaacggaggaccccaaacctttcattttccttgatgtggcttgcttacgcgagtatttg
gcaattgagcttgttgtaccaggagtgcctttcccatttgacctcgaattggcgattgat
gactggattttcatgattttcttcgtcggtaacgatttcttacctcatctgccgagtttg
gaaattcgtgaaggtgccattgatgtgctgctcaagatttggagggcagagctaccgagg
atgggtggttaccttaccaaccacggcaaggtcaatctcgaccgagctcaagttattttg
gaagggctggccaagtctgaggatgaaatctttcagaagagaaaggatgatgaagagcgc
caggagcattcgcagaagcgcagaaagattgaagaacataaacgacaggatgaggacaag
gcgcgtgaagaagggcgtaatgctttgaccttgaacggcacagagtacgtcgccgttgat
aaccccgctgcaactgctcgtggcggtcctctccacccatcattgccatctcgaccggcg
ttcgacctcgtccccaaagaggaggtggcaaagcccgatgatcagcagcaaagagcaaag
aaggcaatggctggctccaactcggacatagttaaaaatcgtaaggctatcaggatggca
aatatgagtgcggctcaggcactcaaagctgagttggagggtagtgatgacgtgaacatc
ggcgacaaaaaggcgattgctcaagaaggaaaggaagaggatgaagcggttgtgactgtt
gagaggacggaggacgaggaaaaggaacagttgacaaaagaggaagctagaggaattttg
gaagagcaaggcgagaaggaaggtgttgacgaggagatagtccctcccgctatccagaca
gacgaggatgagggtggggcgcctgttggcgatgccaccatggccgagaatgacgactcc
gttaccaccaacgacgacgaggatcccacacatattcctcgcaagaggaagaggggcgat
tccgatggtgataaggagagcaatgaggaggatgaggatgacgacgaagatgatgatgac
gatgcaccacctaatcccgaagctgaccagcctattccgaagaaaaagctcaaggtcaat
gcagacggaacagtcgattatgaagatgatatcaagctgtgggagcccggatacagagaa
aggtattacgagaagaagtttggtgtgaaattgtcagagagagaatttattgacaaggtt
accaagtcctacatggaaggactctgctgggttcttgaatattattaccagggtgttcct
gcctgggattggttctatccttatcactatgcgccttttgctcaagacttccgcaatgtt
gggtctatggacatcaaatttgagaccagtatgcctttcaagccgtttgctcagcttttg
ggtgttttcccagccgctagccgaattcatttgcctgaaccgttacagactctcatgatt
gatgaagactcacccatcctcgacttctaccctcccgactttgagatcgacatgaacggc
aaaaaaatggcttggcaaggcgtcgctcttttgccatttatcgaccagaatcgtctcttg
accgctttgaagagtaaggaggagcttctatctgatgacgagaagaggagaaatagttgg
ggagacaatgttatgttcatcgcgaacgagaatccgttgtatgatctattctgtgataag
ttgtatggtttaagagcgaaggacgtgagcaagcctataccaattgacaccaaagcttcg
tacggcatgactggttctgttctacccgatcccaactgtgttcctgcgtccacatttgac
acccctattcccagcattttcgaatgccctgatcttaaccccaacgactccatatccgtc
cgatattacttccctcgccaagcgcatcctcatcgatcgattctgctgagaggatacagg
cctgagcctgcgagactgacggaaagcgacaaagattgggttcgacgtggtggtcaaggc
ggaagaagaggtcacaggcagagcggtaatgggaatggaaatgtaaccggtggaccgggt
atggcgagaggaaggtacgagagtgggccgccacggaccaatggctaccaacaacctcca
cctaggtcgaattatgggggtagctctggttacggctacggcgcccctgcacctctgccg
tcaagaccgcctatatcatcgtatggtggtggagcaggcggatatgggtacggtaatccc
tatgcggcagcgccgaatccttatgccggaggttatggagcaccagcaccttatgctgca
ggaggccatggtcagcgtccctacgtaccaccgctgccgccacccaacccatactctgcc
ccaccgccgacttatggcagacctcctgcgggaggatatggttatggtgctcctccgccg
agaggcgccggttacaatccttatacctccaggaggtag
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integrated database retrieval system
