Cellulophaga baltica 18: M666_00315
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Entry
M666_00315 CDS
T03565
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cbat
Cellulophaga baltica 18
Pathway
cbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M666_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbat03021
]
M666_00315
03019 Messenger RNA biogenesis [BR:
cbat03019
]
M666_00315
Transcription machinery [BR:
cbat03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M666_00315
Messenger RNA biogenesis [BR:
cbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M666_00315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIZ40156
UniProt:
A0AAU8RI98
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All DBs
Position
90638..92356
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AA seq
572 aa
AA seq
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MFEISDLKSKKLPELQEIANGLNVPKYKTLKKLDLVYQILDVQAANPKVVQAAISSTTPE
VAEKPKPAKAPRPKKPRITAKTDKKEEPVVEKPTDSAPKKPARPNKPNPRPVAAKDAPAK
TEATPSKESTPKEARVPHPKNTKAPVASQKKEFQKKTPVHNNQNNNNSNPNQNKPNPRPK
QEKNNNFDKDLKNRYKEPEYEFDSIIASEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQ
SQIRLFGLKTGDTVLGNVRPPKEGEKYFPLIKVNKINGIDPQVVRDRVAFEHLTPLFPQE
KFNLSERQGTISTRIIDLFSPIGKGQRGMIVSQPKSGKTMLLKDIANGIAANHPEVYQII
LLIDERPEEVTDMQRNVRGEVVASTFDKEPTEHVRVANIVLEKAKRLVECGHDVVILLDS
ITRLARAYNTVQPPSGKVLSGGVDANALHKPKRFFGAARNIEGGGSLSIIATALTETGSK
MDEVIFEEFKGTGNMELQLDRKIANRRIFPAIDLTSSSTRRDDLLLDEATIQRMWIMRKY
LADMNPIEAMEFIEQRIKQTKNNEEFLMTMSQ
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagatttaaaatcaaaaaagcttcctgagcttcaggaaatagccaat
ggtttaaatgtaccaaagtacaaaaccttaaaaaaactagacttagtttatcaaatttta
gacgtgcaagctgccaaccctaaagttgtacaagctgcaataagtagtactactcccgaa
gtagcagaaaaacctaagccagcaaaggctcctagacctaaaaaacctagaatcacggct
aaaactgataaaaaggaagaacctgttgttgaaaaaccaacagacagcgctccgaaaaaa
ccagcaagacctaacaagcctaatccaaggcctgttgcggcaaaagatgcacctgctaaa
acagaagctactcctagtaaagagagtactccaaaagaagcaagagttccgcatccaaaa
aatacgaaggctcctgttgctagtcagaaaaaagagtttcaaaaaaagacgcctgttcac
aacaaccagaacaataacaatagtaatccaaatcaaaacaaacctaatcctagaccaaaa
caggagaagaataataattttgacaaagatttaaagaacaggtataaggaaccagaatac
gaatttgatagtattattgctagtgaaggtgttctcgatattatgcaagatggctacggc
ttcttacgttcttcagattacaactacttatcatctccagatgatatttatgtatcacaa
tcacaaatccgtttgtttggtttaaaaactggagataccgttttaggaaatgtccgccca
ccaaaagaaggtgaaaagtattttcctttaataaaagtgaataagataaatggtattgat
ccacaagttgtacgtgatcgtgtcgcttttgagcatttaacacccttattccctcaagaa
aaatttaatttatcagaaagacaaggtaccatatctacacgtattattgatttattctct
ccaattggaaaaggacaaagaggtatgatcgtatcgcaacctaaatctggtaaaacaatg
ttgcttaaagatatcgcaaatggtattgcagcaaaccacccagaagtatatcaaattata
ttattaattgatgaacgtcctgaagaagttacagacatgcaacgtaacgttcgcggagaa
gttgttgcttctacttttgacaaagaacctacagaacacgttagagttgctaatatcgtc
ttagaaaaagccaaaagactagtagaatgtggtcatgatgttgttatcctcttagactct
ataacacgtttagcgcgtgcttacaacacggtacaaccgccttctggaaaagtattaagt
ggtggtgtagatgccaatgctctacataaaccaaaacgtttctttggagctgctcgtaat
atagaaggtggcggatcgctatctattattgcaactgctttaacggaaacaggttctaaa
atggacgaggttatttttgaagaattcaaaggtaccggtaacatggaactacaattagat
cgtaagattgctaatcgtagaatattccctgctatagatcttacctcttctagtacacgt
agagatgatttattgttagatgaagctacgatacaacgtatgtggattatgcgcaagtat
ttagccgatatgaacccaatagaagcgatggagtttattgagcaacgcattaaacaaaca
aaaaacaatgaagagtttttaatgacgatgagtcaataa
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