Cellulophaga baltica 18: M666_16910
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Entry
M666_16910 CDS
T03565
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbat
Cellulophaga baltica 18
Pathway
cbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M666_16910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbat03019
]
M666_16910
Enzymes [BR:
cbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M666_16910
Messenger RNA biogenesis [BR:
cbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M666_16910
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UTP25_NTPase-like
Helicase_C_2
PHB_acc_N
Motif
Other DBs
NCBI-ProteinID:
AIZ43084
UniProt:
A0AAU8S558
LinkDB
All DBs
Position
complement(3928999..3930348)
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AA seq
449 aa
AA seq
DB search
MSSFEDFNLKKQLNYAIEDLKFSTPTPIQEAAFSVVMSGKDIVGIAQTGTGKTMAYMLPI
LQELGFSKQVYPRVLVLVPTRELVLQVVENIESFAKYINVRVLGVYGGVNINTQKQQCVQ
GTDILVATPGRLYDLALSKAVKLKEVKKLVIDEVDVMLDLGFRFQLINIFDLLPARRQNI
MFSATMTSDVDALIDDFFVAPEKVSIAVSGTPLENIAQVCYAVPNFYTKVNLLIRLLKDK
DTFKKVLVFVGNKRFADKVFEEMEEAFGSESCVIHSNKSQNYRMRSIRQFDEGQNRILVT
TDVMARGLDLDKITHVINFDTPNYPENYMHRIGRTGRAEHQGNSVLFYTEKEEPSKDDIE
TLMDYKIPLLAIPENVEISEELIAEERPRIIETDNPNQTTLASQGSFHEKKEKNKKTNQG
GSYQRIIAKKYKKPKTKGDKNYNKRNKKK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttttgaagatttcaatttaaaaaaacaattaaattacgcaattgaagattta
aaattttcaacaccaacacctatacaagaagcggctttttctgtggttatgtcagggaaa
gatattgttggaattgcacaaacaggtactgggaaaacaatggcttacatgctgccaata
ttacaagaattaggtttttctaagcaagtatatcctagagttttagtattagttccaaca
agagaattagtattacaagtggtggagaatattgaaagctttgctaaatatatcaatgtc
cgtgttttaggtgtgtatggtggtgttaatattaatacgcaaaaacaacaatgcgttcaa
ggaacagatattttggtggcaacaccaggaagattgtatgatctggccctttctaaagct
gtaaaattaaaagaagtaaaaaaattagtaattgatgaagtagatgtgatgttggattta
ggattccgattccaactgataaatatctttgatttactaccagcaagaagacaaaatatt
atgttttctgcgacgatgacgagtgatgtagatgcacttatcgatgattttttcgttgcg
ccagaaaaagtttctattgcagtgagtggtactccgttagagaatattgcacaggtatgc
tacgcggttcctaatttttataccaaagtaaatttattgattcgcttattaaaagataag
gataccttcaaaaaagtattagtttttgttggtaataagcgttttgcagacaaggttttt
gaagaaatggaggaggcttttggaagcgaatcttgtgtaattcactccaataagtctcaa
aactatagaatgcgctccattcgtcagtttgatgaaggtcagaatcgtattctggtaact
accgatgttatggcacgtggtttagatttagataaaattacgcacgtaatcaactttgat
acgccaaattaccctgaaaactacatgcatagaattggtagaacgggtagggcagagcac
caaggtaattctgttttattttatacagaaaaagaagagccttctaaagatgatattgaa
actttaatggattataaaattccgttgctggcaattcctgaaaatgtagaaatctcagaa
gaactcatagcggaggagcgccctagaattattgagacagataatcccaaccaaacgaca
ctagcttctcagggtagctttcatgaaaagaaagagaagaataaaaaaacaaatcaagga
ggttcttaccagcgcattatcgctaaaaaatataagaagcctaaaactaagggagataag
aactataataagagaaataagaagaagtaa
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