Marnyiella aurantia: H1R16_05150
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Entry
H1R16_05150 CDS
T08940
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cbau
Marnyiella aurantia
Pathway
cbau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H1R16_05150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbau03019
]
H1R16_05150
Enzymes [BR:
cbau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H1R16_05150
Messenger RNA biogenesis [BR:
cbau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H1R16_05150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
ERCC3_RAD25_C
Helicase_C_2
UvrD-helicase
HEM4
Cas3-like_C_2
P-loop_SecA
Flavi_DEAD
AAA_22
Helicase_RecD
SMC_N
Motif
Other DBs
NCBI-ProteinID:
QMS99574
UniProt:
A0A7D7LS42
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All DBs
Position
1112828..1114081
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AA seq
417 aa
AA seq
DB search
MLFTDLNLIKPILDALKQEGYEKPTPIQQQAIPEILKGRDLLGTAQTGTGKTAAFAIPIL
QNLTEKNIRNNQIKALILTPTRELAIQIEESFNAYGRNLKLRNLVVFGGVKQGAQEQSLK
RGVDILVATPGRLLDFISQGIISLKQLEIFVLDEADRMLDMGFVHDVKKIVKMLPEKRQT
LFFSATFPDEIKTLANTILRNPVKVAVAPVSATADTIQQKVYFVEKEDKLELLTHILKND
IQESVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNARQNALTNFKSGKTRILVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGQSISFVDSLDLLNLKNTEKL
IGKKIPVEKDHPYHTDNLVPQKRDSNNKPFTARPKPQAKENIGYKKPHNKSNFSRNK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttacagacttaaatttaattaagcccatacttgatgcgcttaagcaggaaggt
tatgagaaacctactccaatccaacaacaggctatacccgaaatactgaaaggccgcgac
ttacttggaactgcccaaaccggaacagggaaaacggcagcctttgccatccctattctg
cagaatcttacagaaaaaaacatccgtaacaaccagattaaggccctaatccttacaccc
acgcgtgagcttgctattcagattgaagaaagcttcaatgcctatggccgtaacctgaaa
ctgagaaaccttgtggtttttggtggagtaaaacaaggcgcgcaggagcaatcactgaag
aggggtgtagacatattggtagctacgccaggcagattactggatttcatctcacagggt
attatctcactaaagcaactggaaatctttgtcctggacgaagccgacagaatgctggac
atgggctttgttcatgatgtaaagaaaatcgtgaagatgctgcctgaaaaaagacagacc
ttatttttctcggctacctttccggatgagataaaaactctggccaataccattctccgc
aaccctgtgaaggtggcggtggcgccggtatctgcaacagcagacaccattcagcagaag
gtttattttgttgagaaggaagacaaactggaactgctcacccatatccttaaaaacgac
atccaagaatcagtacttgtgttctctagaaccaagcacggggctgataaaattgccagg
aagctgcagtcgcataagatttcagccgaagccattcatggaaataagtcgcagaatgcc
agacagaacgcgcttaccaactttaaatccggaaagacaaggattttagtagctacggat
attgccgccagagggattgatattgatgaactgaaatacgtagtgaattttgaactttcc
gatgtctccgaaacctatgtgcacaggatcggtagaaccggccgtgccggtgccgaaggg
caatccatttcctttgtggacagcttggacctgctgaaccttaagaatacggaaaaactg
attgggaaaaaaattccggtggaaaaggaccatccttatcataccgataatctggtaccg
cagaaaagggattccaacaataaaccatttacggcgagaccgaagccgcaggctaaagaa
aacatcggttataaaaaaccgcacaataagagtaatttctcaaggaataagtaa
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