Clostridium botulinum B1 Okra: CLD_1053
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Entry
CLD_1053 CDS
T00671
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLD_1053 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbb03021
]
CLD_1053 (rpoA)
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_1053 (rpoA)
Enzymes [BR:
cbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLD_1053 (rpoA)
Transcription machinery [BR:
cbb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLD_1053 (rpoA)
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLD_1053 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
DUF211
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ACA45485
UniProt:
B1IGC5
LinkDB
All DBs
Position
complement(3763409..3764356)
Genome browser
AA seq
315 aa
AA seq
DB search
MLEIEKPKIECVENAEDGSYGKFVIEPLERGYGITLGNALRRILLSSLPGVAADHIKIDS
VLHEFSTVQGVKEDVTELILNIKCLALTMNGEGPKTIYIDEVGPKEVTAADIKTDGDVEV
INKDLHIATLDENGKMYMEINVNRGRGYVTQNKNKTKDMPIGSIAVDSIYTPVKRVNFSV
ENTRVGQITDYDKLTIEVWTNGTIRPEEAVSLSAKILIEHFKLFMTLTDHADDMEIMVEK
EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELCERSMDDMMKVRNLGKKSLEEVE
QKLEALGLGLRKSED
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaatagaaaagccaaaaatagaatgtgttgaaaatgctgaagatggttcttat
ggtaaatttgtcattgaaccattagaaagaggttatggaataactcttggtaatgctttg
agaagaattcttttatcgtcattacctggagttgctgcagaccatataaaaattgacagt
gttcttcatgagttttcaacagtacaaggtgtaaaagaggatgttacagaattaattctt
aacatcaaatgtttagcacttactatgaatggagaaggtccaaaaactatatatatagat
gaagtaggacctaaagaagttacagcagctgatatcaaaacagacggagatgttgaagta
ataaacaaagatttacatatagcaacccttgacgaaaatggtaagatgtatatggaaatc
aacgttaatcgtggtaggggctatgtaactcaaaacaagaataaaactaaggatatgcca
ataggaagtatagcagtagattcaatttatacacctgttaaaagagttaacttttccgtt
gaaaatactagagttggtcaaataacagactatgataaattgactatagaagtttggact
aatggaactataagaccagaagaagctgtaagtttatcagctaaaattcttatagagcac
tttaagttatttatgactttaactgaccatgcagacgatatggaaatcatggttgaaaaa
gaagaagataagaaagaaaaggttctagaaatgacaattgaagaactagatctttcagta
agaagttataactgcttaaaaagagctggaataaatacagttcaagaactatgcgaaaga
agcatggatgatatgatgaaagttagaaaccttggtaaaaagtccttagaagaagtagaa
caaaagttagaagctttaggattaggcttaagaaaaagtgaagattag
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