Clostridium botulinum B1 Okra: CLD_1251
Help
Entry
CLD_1251 CDS
T00671
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03420
Nucleotide excision repair
cbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLD_1251 (pcrA)
03430 Mismatch repair
CLD_1251 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_1251 (pcrA)
Enzymes [BR:
cbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLD_1251 (pcrA)
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLD_1251 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
CLD_1251 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_12
BCD_RFX
Motif
Other DBs
NCBI-ProteinID:
ACA44539
UniProt:
B1ING2
LinkDB
All DBs
Position
complement(3537634..3539850)
Genome browser
AA seq
738 aa
AA seq
DB search
MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT
NKAAGEMKERIKALVGDVVEGMWVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLV
KQCMEELNINDKEITDREVINTISNQKDNLISPKEFKKISNGNYRKDRIADAYILYQKKL
KTNNALDFDDLIYKTVELFKTNKEVLEFYQRKFRYIMVDEYQDTNKCQYELVKLLASVHR
NICVVGDDDQCIYEWRGADISNILNFEKDYKEAKVIKLEQNYRSKGNILNAANEVIKNNS
QRKNKVLRTENENGNKIKVFRAYSDIDEAKFAASEIKNIIKDSKKSFNDFAVLYRTNAQS
RIFEDVFMKRDIPYRLIGGLKFYDRKEIKDLMAYLKLINNPLDDISLRRIINVPKRSIGD
ATVKKVQEFANEMDECMYSVLLDADQILTLSQRSITSIKKFVSIMNSFIRKKDEISVSAL
IKEILEETGYLKELKNSKNPDDVSRVENLKELVSAAADFERESEDKSLGAFLEKVALVTD
IDNYDENSDSVAMMTVHSAKGLEFPVVFMVGMENGIFPGTQSLSDPKEMEESRRLCYVAI
TRAKEQLYITSAEIRKVFGRTVAYALSDFVSEISKDLKDNVNITGEVATDKVLHKNFGIR
SQKTNSINSYKSPSLNNVPKNNVDSNKLNVGLKVKHKDFGIGTIVSMSKVSDDIKLTIAF
DRRGVKILMLSMAPIEAV
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggatttaaaaaataaattaaataaagaacaatatgaagctgctattactatagatgga
cctttactaatactcgcaggagcaggttcaggcaagacaagggttttgacttatagaata
gctcacatgatagaaaatttaaatatatatccttctaaaattttggccataacttttaca
aataaggctgctggagaaatgaaagaaagaataaaggctttagtaggggatgtggtagaa
ggaatgtgggtttctacatttcactctagctgtgtaaggattttaagaagagaaatagat
aagttaggttatgataaaaattttactatatatgatacttatgatcaaaaaactttagtt
aagcaatgtatggaagaattgaatataaatgataaagaaatcacagacagagaagtaata
aataccataagtaatcaaaaggataatttaatatcacctaaggaatttaaaaaaatttct
aatggaaattatagaaaagatagaattgcagatgcatatattttataccaaaaaaaatta
aagactaataatgcattagattttgatgatttgatatataaaactgtggagttatttaaa
acaaataaagaggtattagaattttaccaaagaaaatttagatacataatggtggatgaa
tatcaagatactaacaaatgccaatatgaattagttaaattattagcttcagttcataga
aatatatgtgtagttggtgatgatgatcaatgcatatatgaatggagaggggcagatata
agcaatatattaaattttgagaaggattataaagaagctaaggttataaaattagagcaa
aattataggtcaaagggcaatatattaaacgctgccaatgaggttataaaaaataattct
caaagaaaaaataaagttttaagaactgaaaatgaaaatggaaacaagataaaagtattt
agagcatattctgatatagatgaagcaaaatttgcagcctctgaaatcaaaaatataata
aaggatagtaaaaaatcttttaatgattttgcagttttatatagaactaacgcacaatcc
cgtatttttgaagatgtgtttatgaaaagagatatcccttatagattaataggtggatta
aagttttatgatagaaaagaaataaaggatttaatggcttatttaaagcttataaacaat
ccattagatgatataagtttaaggagaataataaatgttcctaaaaggagtataggtgat
gctacagtaaaaaaagttcaagaatttgcaaatgaaatggatgaatgtatgtatagcgtg
cttttagatgcggatcaaatattaacattgtctcaaagaagtataacatctatcaaaaag
ttcgtaagtataatgaatagctttataagaaaaaaagatgagataagtgtatctgctctt
ataaaagaaatattagaagaaacaggatacttaaaagaattaaaaaattctaagaatcca
gatgatgtaagtagagtagaaaatctgaaagaattagtttccgcggcagcggattttgaa
agagaatcagaagataaatctttaggagcgtttttagaaaaagtagcattggttacagat
atagataattatgatgaaaattcagatagtgttgctatgatgacagtacatagtgctaag
ggattagaatttcctgtagtatttatggtaggtatggaaaatggaatatttccaggaaca
caatcattgtcagatccaaaagaaatggaagagtctagaagactgtgttatgttgctata
acaagagcaaaagaacagctatatataacttcagcagaaattagaaaagtatttgggaga
accgtagcttatgctttatcagattttgtaagtgagatatccaaagatttaaaagataac
gtaaatattacgggagaagtagcaactgataaagtattgcataaaaattttggtataaga
tcacaaaaaacaaatagtattaattcttataaatcacctagcttaaataatgtacctaaa
aataatgtggattctaataagcttaatgtaggtttaaaggttaagcataaagattttgga
ataggaactatagttagtatgagtaaggtttcggatgacataaagttaactattgctttt
gaccgtagaggtgttaaaatattaatgcttagtatggcgccaattgaagcggtttag
DBGET
integrated database retrieval system
