KEGG   Clostridium botulinum B1 Okra: CLD_1608
Entry
CLD_1608          CDS       T00671                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
  KO
K03086  RNA polymerase primary sigma factor
Organism
cbb  Clostridium botulinum B1 Okra
Pathway
cbb02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cbb00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CLD_1608 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbb03021]
    CLD_1608 (rpoD)
Transcription machinery [BR:cbb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CLD_1608 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r1_1 HTH_PafC Exonuc_VII_L
Other DBs
NCBI-ProteinID: ACA46285
UniProt: B1ILK2
LinkDB
Position
complement(3184053..3185138)
AA seq 361 aa
MKEKKNNAKDKNEKMKLVRRLIDKGKKSGSLSYKEIMDELEEIDLSPEQIEKIYDVLESM
GVEVTGDMNDIDVKEEDIDLSVPEGIAIDDPVRMYLKEIGKVALLTSEEEIELAQRIEAG
DMVAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA
TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPV
DKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTL
TPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL
D
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgaaagaaaagaagaataatgctaaagataaaaatgaaaaaatgaagttagttagacgt
ttaatagataaaggtaaaaaaagtggatcattaagttataaagaaattatggatgaatta
gaagaaatagatttaagtccagaacaaatcgaaaaaatatacgatgtattagagtctatg
ggtgtggaagttacaggtgatatgaatgatatagacgtaaaggaagaggatattgattta
tcagttccggaaggtattgctatagatgatcctgttagaatgtatttaaaagaaataggg
aaagtagcattattaacttcagaagaagaaatagaattagcacaaagaatagaagcagga
gatatggttgctaagaagaaattagcagaggctaatttaagacttgttgtaagtattgca
aagagatatgtaggaagaggaatgttatttctagatcttatacaagaaggtaatctagga
ttaataaaagctgtagaaaaatttgactatagaaaaggttacaaatttagtacctatgct
acttggtggataaggcaggccattacaagggctatagcagatcaagcaagaactataaga
ataccagttcacatggtagaaactataaataaacttataagagtatcaaggcaactatta
caagaactaggtagggagccacagccagaggaagtagctaagattatggaaatgcctgtg
gataaagtaagagaaataatgaaaatagctcaagagcctgtttctttagaaactccaatt
ggtgaagaggaagatagtcatttaggagactttattccagatgatgaagcaccggcgccg
gcagaagcagcagcctttacaatgttaaaagagcaacttattaatgttttggatacatta
acaccaagagaagaaaaggtattgagattaagatttggtttggatgatggaagagccaga
actttagaggaagttggaaaagaatttaatgtaacaagagaaagaataagacagatagaa
gcaaaagccctaagaaaattaaggcacccaagtagaagtaaaaaattaaaagattattta
gattaa

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