Clostridium botulinum B1 Okra: CLD_2217
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Entry
CLD_2217 CDS
T00671
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03030
DNA replication
cbb03430
Mismatch repair
cbb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLD_2217 (polC)
03430 Mismatch repair
CLD_2217 (polC)
03440 Homologous recombination
CLD_2217 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cbb03032
]
CLD_2217 (polC)
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_2217 (polC)
Enzymes [BR:
cbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLD_2217 (polC)
DNA replication proteins [BR:
cbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLD_2217 (polC)
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLD_2217 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
Rv2179c-like
tRNA_anti-codon
RNase_H_2
DEDDh_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACA43948
UniProt:
B1II54
LinkDB
All DBs
Position
complement(2541591..2545889)
Genome browser
AA seq
1432 aa
AA seq
DB search
MENTSVGDLQKEINKEGFDTDKEIKIVRVQYFRKKNKLRIILKSIGNFTKEKEDHIKSIL
KKRFSMVEDFEIICYKDLSNITLEELSKKYWVDIVNLASSSVPIARDCLLKSKREVLEDS
INITYNNEFLCRFLSKNKFEGKLKSYIRDIFGIKCNIKLEYDKSFNEEDYFKTIETMEKS
MIKNVLSEIKSKEKKVIRKENSPKTREEENKDTSVILGRSIKEDSIFMKDLNENSGIVVV
CGDVFKKEVIETKTGRKIVTFFITDYTNSMTVKLFPRPRDADRIIEEIKEGIYCKVRGEV
VNDPYARECVIMAKDIVKTTKIEKMDIAEEKRVELHMHSQMSAMDGMTPVSELVKRAAKW
GHKAVAITDHGVVQAYPDAMSAAKKGNIKVIYGIEAYLVDDGVPIVSKAGDKTIEDTFVV
FDLETTGFSSKNDKIIEIGAVKIEKGKIVDRFSEFVNPERSIPDKITELTSITDDMVDDK
EAIDKILPRFIEFIGDSVVVAHNAAFDASFINKNCKDLKIEFKNSVMDTVTLSRFLFPEL
KRYKLNVIAKHLGISLENHHRAVDDAKATADILLKSFEMLKEKEIITLHNLNKEFLGNIN
IKKEPTYHLIILAKNAVGLKNLYKLVSKSNLEYFFKRPRMAKSLINEYKEGLIIGSACEA
GQIYKEILKGKTKEELKNMINFYDYLEIQPLGNNEFLVKNGSVKDEKELQEINKKICELG
EFYNKPVVATCDVHFLDEEHEVFRRILMSGQGFSDADNQPPLYFRTTEEMLKEFEYLGEE
KAKEVVIHNTNKIADMIDEIKPIPEETFPPKIEGAEEDIRRMTIEKAHAIYGDPLPEIVE
KRLTKELNSIINNGYAVLYLIAHKLVAKSYEDGYLVGSRGSVGSSFAATMSDITEVNGLP
PHYVCPKCKYSEFFTDGSVGSGADLEDKDCPNCGTKLIKDGHDIPFETFLGFEGDKEPDI
DLNFSGEYQGVVHKYTEVLFGKGHVFKAGTIGTIAEKTAYGFVKKYLDEKNIKANNAEIE
RLSKGCTGVKRTSGQHPGGIMVVPADNEIFNFTPIQHPADDTESDVITTHFDYHSISGRL
LKLDILGHDDPTVLRMLQDLTQVDPKSVPLGDPKVISLFTSPKALGVTEEDIDCPVGTYG
LPEFGTKFVRQMLLDTKPKSFAELVRISGLSHGTDVWLNNAQYFIKEGYTTIKDCISTRD
DIMVYLLQKELPPKSAFTIMEKVRKGKGLTEEQEALMKEHDVPDWYIESCKKIKYMFPKG
HAVAYVMMAMRIAYFKVYYPRAYYATYFSVRADDFDADLIVKGEEKIKEKMNELYAMGNN
ITQKDKGLLTILEISYEMYKREIKFLKVDLYKSNATKFLIEGDSIRPPLSALQGVGKNAA
KSIEEARLEGEFISKEDLRLRTKVTKTVIETLENHGCLRGMQETNQISLFSL
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggagaatacttcagttggtgatttgcaaaaggaaataaataaagaagggtttgataca
gataaagaaataaaaatagtaagagttcagtattttagaaaaaaaaataaactaagaata
atactaaaatccattggtaattttactaaagaaaaagaagaccatataaaaagtatatta
aagaagagattttctatggtggaggattttgaaataatctgctataaagatctatccaat
attaccctagaggaactttcaaaaaaatattgggtagatatagtgaatttagcttcttct
tctgtacctattgcaagggattgtcttttaaaatctaaaagagaagtgctagaagatagt
ataaatataacctataacaatgaatttttatgtaggtttctttcaaaaaataaatttgaa
ggcaaactgaaatcctatataagagatatatttggaataaaatgcaatataaaattagaa
tatgataaatcttttaatgaagaagattattttaaaactatagaaactatggaaaagtct
atgataaagaatgttttgagtgagattaagtctaaagaaaagaaagtcattagaaaagaa
aattctccaaagactagggaagaggagaataaggatacttctgtcatattaggaagaagt
ataaaagaagatagtatattcatgaaggatttaaatgaaaattctggtatagtagtggta
tgtggagatgtatttaaaaaagaagttatagaaacaaagactggaagaaaaatagtaact
ttttttataacagattacactaattccatgacagttaaacttttcccaaggcctagagat
gcagatagaataatagaggaaataaaagaggggatttattgcaaagttagaggagaagta
gtaaatgacccttacgcaagagaatgtgtaataatggctaaggatatagtaaaaactaca
aaaatagaaaaaatggatatagcagaggaaaaaagagtagaacttcatatgcatagtcaa
atgagtgctatggatggaatgactccagtatcagaattagtgaaaagagctgctaaatgg
gggcataaagcagtggctattacagatcatggtgtagttcaggcttatccagatgcaatg
tctgcagctaaaaaaggtaatataaaagttatatacggaatagaagcttatcttgtagat
gatggagtacctattgtatctaaagcgggggataaaactatagaggatacttttgtagtt
tttgatttagaaactacaggtttttccagtaaaaatgataaaataatagaaataggtgca
gtaaagatagaaaagggaaaaatagtagataggtttagtgaatttgtaaatccagaaagg
agcataccagacaagataacagaacttacaagcataacagatgatatggtagatgataaa
gaagctatagataaaatacttccaagatttatagaatttataggagactctgtggtggtt
gctcataatgcagcctttgatgcatcttttataaataaaaattgtaaagatctaaaaata
gaatttaaaaatagtgtaatggatactgtaacactaagcagatttctatttcctgaatta
aagagatataaattaaatgttatagcaaagcatttaggcatatccttagagaatcatcat
agagctgtggacgatgctaaagccacagcagatatcttattaaaatcttttgaaatgtta
aaagaaaaagaaataattaccttacataatttaaataaggaatttttaggaaatataaat
ataaaaaaagaacctacctatcatttaataattttggctaaaaatgcagtaggtcttaaa
aatttatataaattagtttctaaatctaatttggagtatttctttaaaagaccaagaatg
gctaaaagtcttataaatgagtataaagaaggacttataataggttctgcctgtgaggcg
ggtcaaatatataaagaaatattaaaagggaaaacaaaagaagaattaaaaaatatgata
aatttttatgattatttagaaatacaacctctaggtaataatgaattccttgtaaaaaac
ggttccgtaaaagatgagaaagagcttcaagaaataaataaaaaaatatgtgaattaggt
gagttttataataaacctgtagtagctacttgtgatgtgcattttttagatgaagaacat
gaagtatttagaagaatattaatgtcaggtcaaggttttagtgatgcagataatcaacca
ccactttattttagaaccacagaggaaatgcttaaagaatttgaatatttaggagaggaa
aaggctaaagaagtagtaattcataatacaaataagatagcagatatgatagatgaaata
aaaccaattccggaggaaacttttccacctaaaatagagggagcggaagaagatataaga
agaatgactatagaaaaggctcatgctatatatggagatccgctccctgaaatagtagaa
aaaagattaacaaaagaattaaattctataataaacaatggttacgctgtactttattta
atagctcataagctagtggccaaatcctatgaagatggatatttagtaggatccagagga
tccgttggatcttcctttgcagctactatgtcagatattacagaagttaatggattacca
cctcattatgtttgtcctaaatgtaaatatagtgaattctttacggatggatctgtaggt
tcaggagcagatttagaggataaggattgtccaaattgcggaactaaattaataaaagat
ggtcatgatataccttttgaaacttttttaggtttcgaaggggataaagaaccagatata
gatttaaatttttcaggagaatatcaaggagtagttcataaatatacagaagttctattt
ggaaaagggcatgtttttaaagcaggaactattggtactatagcagaaaagactgcctat
ggttttgtaaaaaagtatttagatgaaaagaatataaaagctaacaatgcagaaatagaa
agattatccaaaggatgtacaggagttaaaaggacatcaggacagcatccgggaggaatt
atggtcgtgcctgcagataatgaaatatttaactttacccctatacaacatccagcagat
gatacagaaagtgatgttataactacccattttgattatcattctataagtggtagactt
ttaaaattagatatattaggtcatgacgaccctacagtacttagaatgcttcaggatttg
actcaggtagatcctaaatctgtacctctaggggatccaaaggttataagtttatttaca
tcaccaaaggctttaggggttacagaggaggatatagattgtcctgtaggaacttatggg
cttccggagtttgggactaaatttgtaagacaaatgttattagatacaaaaccaaaaagt
tttgcagaattggtaagaatatcaggattatcccatggtacagatgtatggcttaataac
gctcagtattttataaaagaggggtatactactataaaggattgtatatctacaagagat
gatataatggtatatttacttcaaaaggaactgccaccgaagagcgcttttacaataatg
gaaaaagtaagaaagggtaaaggccttacagaggaacaggaagctttaatgaaagaacac
gatgtgccagattggtatatagagtcctgtaagaagataaagtatatgttccctaaaggt
catgctgtagcctatgtaatgatggccatgagaatagcttattttaaagtttattatcca
agggcttattatgctacttatttttctgttagagcggatgattttgatgcagatctaata
gtaaagggagaagaaaaaataaaagaaaaaatgaatgaattatatgccatgggcaataat
ataactcaaaaggataaaggtcttttaactatacttgaaatatcttatgaaatgtataaa
agagaaataaagtttttaaaggtagatttatataaatctaatgctactaaatttttaata
gaaggagatagtataagaccacctttaagcgcccttcaaggtgtagggaaaaatgcagct
aaaagtatagaagaagctagattagagggcgaatttatatcaaaagaagatttaagatta
agaactaaggttacaaaaactgttatagaaactttagaaaatcatggttgtttaagagga
atgcaggaaactaatcaaatatccttatttagtctttag
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