Clostridium botulinum B1 Okra: CLD_2858
Help
Entry
CLD_2858 CDS
T00671
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLD_2858 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbb03019
]
CLD_2858 (dbpA)
03009 Ribosome biogenesis [BR:
cbb03009
]
CLD_2858 (dbpA)
Enzymes [BR:
cbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLD_2858 (dbpA)
Messenger RNA biogenesis [BR:
cbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLD_2858 (dbpA)
Ribosome biogenesis [BR:
cbb03009
]
Prokaryotic type
rRNA helicases
CLD_2858 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
UvrD-helicase
SWI2_SNF2
AAA_30
Helicase_C_2
AmiA-like
CD4-extracel
Motif
Other DBs
NCBI-ProteinID:
ACA44514
UniProt:
B1ILW8
LinkDB
All DBs
Position
1890790..1892235
Genome browser
AA seq
481 aa
AA seq
DB search
MNKLTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSI
PVCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELK
QRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVT
MLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIYKE
VVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVCTD
VAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVIFLEDIEDY
IEKEIPKRKEPSSEEVDKGKKIFEENIKNRIKTKVPKNNKKQKDITKIYISAGRKKKIRP
GDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGNIVLKASEDMKIKGKKVRIQRAV
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaataaattaacttttgaaaattataaattaagtgatgaaatattaaaatccctggga
aaactaggatataaaaatccctctgaggtgcaaaaacaagttataccactaatattaaag
gataaggatattatagtaaagtctgaaaccggtagcggtaagactgcggccttttccata
cctgtctgtgaaaaattagagctagaagaaaaagatcctcaagtattagtgcttacacct
actagggaattagctcttcaaatcaaagaggagatatcaagcatagctttatataaaaga
ttaagatgtacagcaatttttggtaagcaacctatgagccttcaaaagagggaattaaag
caaagagtacatttagttgtaggtactccaggtagaactttagatcatatagaaagagaa
aatttagatttaaaaaagataaagtattttgttttagatgaagcagatgaaatgcttaat
atgggatttatagatcaagtagaagctgttataaaaagattacctaaaaatagagtaact
atgttattttcagctactataccggaaaaaatagagaatttatgcaaaaaatatatgaat
aatccccaaaatataaacataaatccagaaaacataactacagacaccataaatcaatgc
tattatgaagttgaggataaagataagttttctcttttacaaaaaataatatataaagaa
gtagtagataattctattatattttgtaatacaagagaaaaggtagatgaagtattaaaa
aatatgaagaaaaaagggcttaacgctgttggtctgcatggtggtatggaacaaaaagat
agattagagactatgaaaaagttcaaagaaggtgaatttcagttcttagtatgtacagat
gtagcagctagaggtattcatatagaaaatataagccatgttataaattatgagatgccc
tatgaaaaagaaagttatgttcatagaatagggagaacaggaagagcaggaaaagaagga
gtagctataacctttatagaacctaataaagttatatttttagaagatatagaagattat
atagagaaggaaatacctaaaaggaaggagccttcctcggaagaagtagataagggtaaa
aaaatatttgaagaaaatattaaaaataggattaaaacaaaagtgccaaaaaataataaa
aagcaaaaggatattactaaaatatatataagtgcaggaagaaagaaaaaaattaggcca
ggagatattgtaggtgctattactagtatagaaggcattaatgtagataatataggtata
atagatatacaggataatcactcctatgtagatatactagaaggaaaaggaaatatagta
cttaaagctagtgaagatatgaaaataaaagggaaaaaagtaagaatacaaagggcagta
aaataa
DBGET
integrated database retrieval system
