Clostridium botulinum B1 Okra: CLD_3238
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Entry
CLD_3238 CDS
T00671
Name
(GenBank) helicase, UvrD/REP/exonuclease family protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03420
Nucleotide excision repair
cbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLD_3238
03430 Mismatch repair
CLD_3238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_3238
Enzymes [BR:
cbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLD_3238
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLD_3238
MMR (mismatch excision repair)
Other MMR factors
CLD_3238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
RNase_T
AAA_19
UvrD_C_2
Viral_helicase1
Rv2179c-like
DEDDh_C
AAA_12
DNApol_Exo
AAA_11
AAA_30
DUF3127
DEAD
Motif
Other DBs
NCBI-ProteinID:
ACA43400
UniProt:
B1IJU7
LinkDB
All DBs
Position
1460132..1462699
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AA seq
855 aa
AA seq
DB search
MLDIYLNDKQKKVINTLDKNILLLSSAGTGKTKTLSMRIGKIIAKDLALGEQILCLTFTN
RACKEMKEKIIETVGKEGLKVTVKTFHSFCFDVIKKEAKKNTDISFDFTIYDEEDTKEII
SELNSYKFNVSCLQRFINIVKEKSINYKDRDYKDVIDTMIKYNPNIFNDICKNEKYMVDK
TLVDYLKIYGYLMVISYDKKLYERHGLDFNDLIIKVHDLFQKDKITTYWREKYKFIHIDE
IQDTSEIEYNIVSKLFKNNNIMLSGDYYQTIYEWRGSNPSIIFDNYKKEFNPEFIVFDKN
YRSSEILLKASYGFLTNAFGDGVNEIYKEGIEPRANIKGDLIEFKKAYDFMEEATFIFNK
IKSLKVEKLSRVAILTRNNRINIALSEKFKILNSKLPKEDRVGFLLVDEFKFFRREEIKD
VLAYLKLIVNDFDSNSLKRILKKFGKGIGERTIEEIEKEENIKIGVRLTDLIHKNTQEYG
DYYELLTRELDNENVVVFDVESTGINIIEDEIVQIAGIKINNKGEVIESFQRFLIPKKSV
GDSYLVHGFSDQFLKENGENKKVVLKDFLEFIKDTVIVGHNVTFDISILNSELERLSLEK
ASFKTYYDTLDIARRFYPSLTNHKLETLSKLFNTETKSSHDAMDDILATKDVLMAMLKEK
VKPTIINRMVVYGKYIKKFEPIYEEITNLKKLSYIKNPKDIIGEIVNKTKIKEIYKDQYI
KINNLREFFVIAKEIENKEISSRDNLIELLKITSLSNSELDRMLTKYPRVPIITVHQAKG
AEFDYVFLAGLQNNIFPNYMAVKEGNEIEEKRLFYVAMTRAKKYLYLSFSEYEHNRRKAK
SMLIDYIPKNYLKYM
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgttagatatataccttaatgataaacagaaaaaagtaataaatacattagataaaaat
atactccttttgtcttctgcaggtacagggaaaacaaaaacattaagtatgaggatagga
aaaataatagctaaagacttagctttaggagagcaaatactttgtttaacttttactaac
agagcctgtaaggaaatgaaagaaaaaataatagaaacagtagggaaagagggattaaaa
gttactgtaaagacttttcatagcttttgttttgatgtaataaaaaaagaggcaaaaaag
aatacggatatttcctttgattttactatatatgatgaagaagatacaaaggaaataata
agtgaattaaattcatataagtttaatgtttcttgtcttcaaagatttataaacattgtt
aaagaaaaaagtataaattataaagatagagattataaagatgttatagatactatgata
aaatataatcccaacatatttaatgatatatgtaaaaatgaaaaatatatggtagataaa
actttggtagattatttaaaaatatatggatatctaatggtgataagttatgataaaaag
ctatatgaaaggcatggattagattttaatgatttaataataaaggttcatgacttattt
caaaaggataaaataactacatattggagagaaaaatataaatttattcatatagatgaa
attcaggataccagtgaaatagaatataatatagtttcaaaattgtttaaaaacaataat
ataatgcttagtggcgattattatcagacaatatatgaatggagaggttctaacccatca
attatatttgataattataaaaaggaatttaatcctgaatttatagttttcgataagaat
tatagatcctcagagatattattaaaagcttcttatggatttttaaccaatgcttttgga
gatggagtaaatgaaatatataaagaaggtatagagcctagagctaatataaaaggggat
ttaatagaatttaagaaagcttatgattttatggaagaggcaacttttatatttaataaa
ataaaatctttaaaggtagaaaagctttcaagagttgctatattaactaggaataataga
ataaatatagctttaagtgaaaagtttaaaatactaaattcaaagcttccgaaagaagat
agagtaggattccttttggtggatgaatttaaattctttagaagagaggaaataaaggat
gtattagcttatttaaaacttatagtaaatgattttgatagtaatagtttaaaaaggata
ttaaagaagtttggaaagggcataggagaaagaaccatagaagaaatagaaaaagaggaa
aatataaaaataggtgtaagacttacagatttaattcataagaatactcaagaatatgga
gattattatgagcttttaactagagaattagataatgaaaatgtagtagtttttgatgta
gaaagcacaggtatcaatattatagaggatgaaatagtgcaaattgcaggcattaaaata
aacaataaaggagaagttatagaaagttttcaaagatttttgattcccaagaagtctgta
ggggattcttacttagttcatggttttagtgaccaatttttaaaagaaaatggagaaaat
aaaaaggtagttttaaaagattttttagaatttataaaagatacagtaatagtcgggcat
aatgtaacctttgatatatccatattaaatagtgaacttgaaagattaagtttagagaaa
gcaagttttaaaacctattatgatactttagatatagctagaagattttatcctagttta
acaaatcataaattagaaactttaagtaagttatttaatacagaaacgaaatctagccat
gatgctatggatgatatattggctacaaaagatgttcttatggctatgctaaaggaaaaa
gttaaacctactataataaatagaatggtagtgtacgggaaatatattaaaaaatttgaa
cctatatatgaagaaataactaatttaaaaaaattaagttatataaaaaatccaaaggac
ataataggagaaatagttaataaaacgaaaataaaggaaatatacaaagaccaatatatt
aagataaacaatctgagggaattttttgttatagctaaagaaatagaaaataaagaaatc
tcatcaagagataacttaatagaacttttaaaaataacttctttgtctaatagcgaatta
gatagaatgcttacaaaatatccaagagtaccaataataacagtgcatcaagcaaagggt
gcggaatttgattatgtatttttagctggacttcaaaataatatatttccaaattacatg
gcagtaaaagaaggaaatgaaatagaagagaaaagactattttatgtcgctatgactaga
gcaaaaaaatatctatatctaagcttttcagaatatgagcataacagaagaaaagctaaa
agtatgcttatagattatatacctaaaaattatttaaagtatatgtaa
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