Clostridium botulinum B1 Okra: CLD_A0129
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Entry
CLD_A0129 CDS
T00671
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cbb
Clostridium botulinum B1 Okra
Pathway
cbb03420
Nucleotide excision repair
cbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLD_A0129
03430 Mismatch repair
CLD_A0129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbb03400
]
CLD_A0129
Enzymes [BR:
cbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLD_A0129
DNA repair and recombination proteins [BR:
cbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLD_A0129
MMR (mismatch excision repair)
Other MMR factors
CLD_A0129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
Microp_apicomplexa_15
Motif
Other DBs
NCBI-ProteinID:
ACA46926
UniProt:
B1INV6
LinkDB
All DBs
Position
pCLD:complement(87926..90019)
Genome browser
AA seq
697 aa
AA seq
DB search
MTDRDFFELIQTKQIKLTDKQKKAVTTSEGVVLVISVPGSGKTLSSIIRIGYLILVRNIN
PNLISCISFSKAAALEMKNRFNTIFGDSIKYSPHFSTIHSLCYLISRTYFKMNNIKYKMI
ENYKDPINKKTIISKIYFEHNKEQISEDELELYSNKISLCKNNFIYPQQVMEKSKTKIEL
FDLPTDFIDIYSNYYKTQKTYNYIDFDDMLIIANNLLAANKEIKSIYVNKFEYMQIDEAQ
DCSPLQYKIIEKLNKDKYNLAFFGDDDQTIYEFQGSDPKLLLNLPKQYKNTQVIYMDQNF
RSYKNLVKYNEIFINKNKERFNKKMIASNDAEGSIELRSFTDFESSNKTIFEKLIPNLNG
NIGILYRNNMSAIPMINYCINHNIHINIKAKFPSLSTNKIIKDILRIYYFSQNMNNAELY
LQIVYKIKPIYISKSMLNKVCKQYNEFSNDLNIFDYMRRYHSSLDMPEYMLEKINDICFD
FEQLAKHTNPAKIISFVFNILEYKEYLNNDKKSDSQIVDIIKYIAKTTNTINEFIIRIKE
IDNVILQENDEDANITLNTIHSSKGLEWSNVIITDINNNIFDTFNKQKEEKIPTEAVNEM
IESTRRLLYVGCTRAKANLYILYNEKDPSVFIYELQKINKNKDNNDKSNDIISKNIYHKK
FGEGKIQEIKGDNIIVLFKTGIKTLSKEICKQHNLLI
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcgagattttttcgaattaatacaaacaaaacaaataaaactaaccgacaaa
caaaagaaagccgttacaacttctgaaggagtggtactagttataagtgttcctggttct
ggtaaaacattatccagtattatacgaattggatatttaatattagttagaaatataaat
cccaatttaatttcttgcatttcatttagtaaagctgcagcattagaaatgaaaaataga
tttaatacaatctttggtgattcaattaaatatagtcctcatttttcaactattcactca
ttatgttatttaattagtagaacatattttaaaatgaataatattaaatataaaatgatt
gaaaattataaagatcctattaataagaaaactataatttctaaaatctattttgaacat
aataaagaacaaatttcagaagatgaactagaactatattctaataagatatcattgtgt
aaaaacaattttatatacccacagcaagtaatggaaaaatctaaaactaaaatagaacta
tttgatttacctacagatttcattgatatatatagcaattattataaaactcaaaaaaca
tataattatatagattttgatgatatgttaatcatagctaacaatctattagccgcaaat
aaagaaattaaatcaatatatgttaataaatttgaatacatgcaaatagatgaagctcaa
gattgtagcccgttacaatacaaaataattgaaaaattaaataaggacaaatataattta
gcatttttcggagatgatgaccaaactatctatgagtttcaaggaagtgaccctaagtta
ttgttaaatttgcctaaacaatataaaaatacccaagtaatatatatggaccaaaatttt
agaagttataaaaatttagtcaaatacaatgagatatttattaataaaaataaagaaaga
ttcaataaaaaaatgattgcctctaacgatgcagaaggaagtatagaattacgaagcttt
acagattttgagagctccaataaaacaatatttgaaaaattaattccaaatttaaatggc
aatatagggatcttatatagaaataatatgtctgcaatacctatgattaattattgtatt
aatcataatatccatatcaatataaaagctaaatttccttctttatcaacaaataaaatt
ataaaagacatattaagaatctattattttagtcaaaatatgaacaatgctgaattatat
ttgcagatagtttataaaataaagcctatatatataagtaaatcaatgctaaataaagta
tgtaaacaatacaatgaatttagtaatgatcttaacatttttgactatatgagaagatac
cattctagtttagacatgccggaatatatgttagaaaaaattaatgatatttgttttgat
tttgagcagctcgcaaagcatactaatcctgctaaaattataagctttgtatttaatatt
ttagaatataaagagtatttaaataatgataaaaaatctgattctcagatagttgatatc
attaaatatatagctaaaactactaatacaataaatgaattcattattagaataaaggag
atagataatgttattcttcaagaaaatgatgaagatgcaaacattactttaaatacaata
cattcatcaaagggcctagaatggtcaaatgttattattacagatattaataataacatt
tttgatacttttaataaacaaaaagaggagaaaatacctacggaagcagtaaatgaaatg
attgaatcaacaagaagactattatatgtaggatgtactagagctaaagctaatttatat
atcctatataatgaaaaagatccttctgtttttatatatgaattacaaaaaataaataag
aataaagataataatgataaaagcaatgatataataagcaaaaacatatatcataaaaag
tttggagaaggtaaaatccaagaaattaaaggtgataatatcattgttttatttaaaacc
ggaataaaaactttatctaaagagatatgtaaacaacataatttgcttatataa
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