Coxiella burnetii Dugway 5J108-111: CBUD_1860
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Entry
CBUD_1860 CDS
T00583
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbd
Coxiella burnetii Dugway 5J108-111
Pathway
cbd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBUD_1860 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbd03021
]
CBUD_1860 (rpoC)
03400 DNA repair and recombination proteins [BR:
cbd03400
]
CBUD_1860 (rpoC)
Enzymes [BR:
cbd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBUD_1860 (rpoC)
Transcription machinery [BR:
cbd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBUD_1860 (rpoC)
DNA repair and recombination proteins [BR:
cbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBUD_1860 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ABS77749
UniProt:
A9KD37
LinkDB
All DBs
Position
complement(1836812..1841056)
Genome browser
AA seq
1414 aa
AA seq
DB search
MRDLVKQLKSEKHTAEFDALRIKLASPEEVRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSL
PSRIGLLLDVTLRDIERILYFEAYVVVDPGMTDLEPRQLLSEEAYLDALEEYGDDFTALM
GAEAIQRLLRDIDVEAEVEALRTELQTTTSETKTKKLTKRLKVLSAFLESGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAILGSNRRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQAGLPKKMALELFKPFIFSKLQLRGLATTVKAAKKLVENEGPEVWDILEEVIREHP
ILLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA
RSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYITRDRVNAKGEGMRFADAQEVVRAYEND
QVDLHARITVRIKEGILNEAGEIEESDRLVNTAAGRILLWQIVPKGLPFALVDQPMTKKA
VTKLLDFCYRNLGLKTTVIFADKLMYMGFHYATHSGVSIGINDLVVPDQKEAIISRAEDE
VREIEKQYASGLVTHGERRNKVIDIWSRTNDQVAKAMMEKIAVEKVKDAEGKEVAQSSFN
SIYMMSDSGARGSAAQTRQLAGMRGLMARPDGTIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEASIEMMPHIEGGDVVEPLRERVL
GRILAEPVMDPKSRKELLAKDTFLDERRVDILEEHSIDRVRVRSAITCEARYGICSMCYG
RDLARGHVVNVGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRATAANNIEVKSTGKIKL
RNLKTVEQAQGNLVAVSRSGELVVQDLQGSEREHYKVPYGATISVRDGDSVKAGQIVAQW
DPHTHPIITEVAGTLRFVDLVDGVTMNRQTDELTGLSSIVITSTKQRSASGKELRPMVKL
VDKNDDDLFLPGGKVPAHYFLPEGTFLTKEDGTTVNIGDVLARIPQETSKTRDITGGLPR
VADLFEARRPKDAAILAEISGVVSFGKDTKDKGRLIITAPDGTTHEELIPKWRHVSVFEG
ETVEKGEVIADGPRDPHDILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQML
RKVKITQPGDTDLLQNEQVERTRVREENEKIIKKDGTVAKVEPILLGITKASLATESFIS
AASFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTGFSYHQQRRAVAGKSVEEKE
IEEKRVTASEAEQALSEALKSSAPQEAKAAQKDE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
ttgagagacttagtaaaacagctaaaaagtgaaaaacacacggctgaattcgatgcattg
cgtatcaagctggcatctccagaagaagttcgttcgtggtcgtacggtgaagtgaaaaaa
ccggaaacgattaattaccgtacctttaaacccgaacgcgaaggattattttgcgcaaaa
atttttggtcctattaaagattacgaatgtttatgtggtaaatataaacgtttaaaacat
cgcggtgtcatctgcgaaaaatgcggtgttgaagtgaccttagcaaaagtacgtcgcgaa
cgcatgggtcatattgagctggcttcaccggtggctcacatttggtaccttaaatcatta
ccttctcgcatcggtttgctattagacgtgacgctgcgtgatatcgaacgcattttatat
tttgaagcttatgtagtggtagacccggggatgaccgatttagaaccccggcaattactt
tcagaagaggcctacctggatgccttagaagaatatggcgatgattttacggccttgatg
ggcgcggaagccatccaacgtttattgcgtgacattgatgttgaagcagaagtggaagcc
ttacgcaccgaacttcaaaccacgacttctgaaaccaaaacgaaaaaactaaccaaacgg
ctcaaggtattaagtgcatttttagagtcgggaaataaacccgaatggatgatattaacc
gtattgcccgttttaccgccggatttacggcctttagttccattggatggtgggcgtttt
gccacctcagatttaaatgatctttaccgtcgggtgattaaccgtaacaaccgattgaag
cggttgttggatctcaatgcgcccgacatcatcgttcgcaatgaaaaacgcatgctacaa
gaagcggtcgacgcattgctcgataacggccggcgcggacgagccattttgggctcaaac
cgccgtcaactgaaatcattagccgacatgattaaaggaaaatcgggtcgtttccgccaa
aatttattgggtaagcgagtcgattattcaggccgttccgtcatcgtcgttgggcctaca
ttgaaattacatcaggccggtttgccgaagaaaatggcgttagagttatttaaaccgttt
atctttagtaaattgcaactgcgaggtttagccactaccgtcaaagctgctaagaaattg
gtagaaaatgaagggccggaagtttgggatattctcgaagaagtgattcgcgaacacccc
attttattaaaccgcgcacccacgctacaccgtttgggaattcaggcatttgaaccggtg
ctggtggaaggaaaggccattcaattacacccgctcgtttgtacagcctataacgctgac
tttgacggcgaccaaatggccgtgcacgtcccattgacgctcgaagcgcaactggaagcg
cgctcgttgatgatgtccactaataacgttttgcatccagccaatggtgagccgattatc
gttccctctcaagatgtggtgctgggtctttattacatcacgcgtgaccgcgttaatgct
aaaggagagggcatgcgatttgctgatgcccaagaagtggtccgcgcttacgaaaatgac
caagtggatttacacgctcggattaccgtgcgcatcaaagaaggcattttaaacgaagca
ggagaaatagaagaaagcgaccgcttggtaaataccgccgccggccgaattttattatgg
caaattgttcctaaagggttgccgttcgcattagtggatcaaccgatgacgaaaaaagcg
gtaacaaaattacttgacttctgctaccgcaatttaggactgaaaaccaccgttattttt
gcggataaattaatgtatatgggatttcattacgcgacccattctggcgtttccattggg
attaatgaccttgtcgtccccgaccaaaaagaagccattatatcccgggctgaagatgaa
gttcgtgaaattgaaaaacaatacgcttccggtttagtgactcacggggagcggcgaaat
aaagtgattgatatttggtcccgcaccaatgaccaagtggccaaagcgatgatggaaaaa
atcgctgttgaaaaagttaaagatgctgaaggcaaagaagtcgcacaaagctcttttaat
tctatttacatgatgtccgattccggcgcccgaggttccgcagcacaaactcgccaatta
gcgggaatgcggggtttgatggcaagaccggatggcaccattatcgaaacgcccattacg
gcaaacttccgagaaggtttgaacgtcttacaatacttcatttcgacccacggggcgcgc
aaaggtcttgccgataccgcgttgaaaaccgctaactcgggttatttaacccggcgttta
gttgacgtggctcaagacttagtcgtcacggaacacgattgcgggacggaagctagtatt
gaaatgatgccccatattgaagggggcgatgtggttgagccattgcgggaacgcgtgttg
ggacgaatattggcagagcccgtaatggatccgaagtcgaggaaagaattgctcgccaaa
gatacttttctggatgaaagacgggttgacattctggaagagcacagcattgaccgagta
agggtccgatcggccattacctgcgaggcgcgttatggaatttgctcgatgtgttatgga
cgcgacctggcgcgcggccacgttgttaatgtgggagaagcaattggggtggtggccgcc
caatccatcggggaacctggcacgcagttgaccatgcgtaccttccatatcgggggtgct
gcttcgcgagccactgcagccaataatattgaggtaaaatccaccggcaaaatcaaattg
cgtaatttgaaaaccgttgagcaagcgcaagggaatttagtcgctgtttctcgttccggt
gaattagtcgttcaagacctccaaggcagtgaacgtgaacactataaagtcccctatggc
gcgaccatctccgtacgagatggcgattcagtaaaagcgggccaaatcgtggcgcaatgg
gatcctcatacccatccgatcattactgaagtcgcgggtacgttaaggtttgtggatttg
gtcgatggggtcaccatgaatcgacaaaccgacgaattaaccggccttagcagtattgtt
atcacttccaccaagcaacgcagtgcgagcggcaaagagttgcggccaatggtgaagtta
gtggacaagaatgatgatgatcttttcttgccgggcgggaaagtgccggctcattacttc
ttgccggaaggaacttttcttacgaaggaagatggcacaacggtcaacattggtgacgtg
ctggcgcgtatcccgcaagagacctccaaaacgcgtgatatcaccggtggtcttcctcga
gtagccgacctgtttgaagctcgacggcccaaggatgccgctattctcgctgaaatttca
ggggtcgtaagttttgggaaagacaccaaagacaaaggtcgcttaattattacggcgccc
gatggcacaacgcacgaggaattaattccaaaatggcgtcacgtaagtgtctttgaaggt
gaaacggtggagaagggtgaagtcatcgccgatggccctcgggatccgcacgatattctt
cgactattgggcgtcaacgcgctggcgaactacatcgtgaatgaagtacaggaagtttac
cgactgcaaggcgtgaaaattaacgataaacacattgaagtcattgtgcgccagatgctt
cgtaaggtaaaaattactcagccgggtgatactgacttattgcaaaatgaacaagtggag
cgtactcgagtacgcgaagaaaacgaaaaaataattaaaaaagatggcacagtggccaag
gtagaaccgattttactcggaatcactaaagcgtccttagctactgaatcttttatatca
gcggcatcgttccaggagaccacgcgagtattaacggcggcctctgtggcaggtaaacgc
gatgatttacgtggattaaaagagaacgttatcgtgggacgtctaattccggcgggcacc
gggttcagctatcatcagcagcgacgtgccgttgctgggaaaagtgttgaggagaaggaa
atagaagaaaaacgggtaacggcgagcgaagcggagcaggctttaagcgaagccctcaaa
tcttccgcaccgcaagaagcaaaagcagcgcaaaaagacgagtaa
DBGET
integrated database retrieval system
