Clostridium beijerinckii NCIMB 8052: Cbei_0086
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Entry
Cbei_0086 CDS
T00547
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbe
Clostridium beijerinckii NCIMB 8052
Pathway
cbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cbei_0086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbe03400
]
Cbei_0086
Enzymes [BR:
cbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cbei_0086
DNA repair and recombination proteins [BR:
cbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cbei_0086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABR32276
UniProt:
A6LPJ6
LinkDB
All DBs
Position
110211..113711
Genome browser
AA seq
1166 aa
AA seq
DB search
MRLKGLLEPLESSLEFQDIIQGIESKRYPIGIYGASESGRGYIISGIFENTNRSIVVVTQ
SDMEAKNLYEDLIFYTSEVYYFPVKEMVFYNIDAISGDLRWARLKVINEILNNKKKIIVT
SIEAFAAKYTPHNLFLEYSMKFKEGDEVNLADISKKLIQSGYERVEMVEGKGQFSLRGGI
LDVFPTGSTYPYRVELFGDEIESIRTFNTESQRSIEKVKKIDIFPAKEVIVSEEMLEVGR
NKLKEEFNKIAESDKDSERVEKLRKILNKNLELLEETSSFETIDSYLPYFTKETESLFDY
FKNYFFIVDNVQRCNGKLESTYLEFEENFTAFSQRGDIFPGQGNLLINKEEVLESFEDEK
IAFIEALTKVSGWLKPLSIVNVAQTTLNNYQGQLDLLIDEILGKKNLGYKTLILSGTRAR
GERLVGTLRDRGIESVYKDTVDKIEYGEVVITFGNQLRGFEYPQYKVCIISDKEVFGAAK
RKLKSSKAKKKGISKIKSFAELKPGDYVVHANHGIGVYKGIKQIDVGGHKRDYLDIVYDK
GDKLYVPVDQLDLIQKYIGSEGKSPKVNKLGSAEWQKAKAKARKSINEIAEDLVKLYAMR
STVKGHKFSKDTEWQKQFEDEFPFEETPDQLTSLEEIKIDMESDKPMDRLLCGDVGYGKT
EVAIRAAFKAVMDGKQVALLVPTTILAEQHYKNIKNRFSDFPIKIDMVSRFRTAKQQKEI
LQKVKEGNLDILIGTHRLVSKDIQFKDLGLLIVDEEQRFGVKQKEKIKGIKKNVDVLTLS
ATPIPRTLHMSLSGVRDISVIETPPEERYPVQTYVVEQNDQLIRDAILREIGRGGQVYFV
YNRVEDIERMAKYVQSLVPESKVGIAHGQMAERQLEKEMFDFMSEEYNVLVCTTIIETGM
DIQNVNTIIIYDADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKD
FTELGSGFKIAMRDLEIRGAGNMMGSSQHGHMASIGYDLYCRMLEDTVKLLKGEIQKEPI
ETTLDIKVDAFISENYIEDEIQKIEVYKKIAAIEGLDDYSDIKEELEDRYSKIPEPVYNL
MDIAYIKSRAKSIFIEEIKETPKELLFKFSQGESEYKNIFKILMEKYKNSVVLKFGSNPY
FAFKLKYIKKENKLEFLKEVFDDIIL
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaaagggttattggagcccttggaaagtagtttagaatttcaagacataata
caagggattgaaagtaaaagataccctattggtatatatggtgcatctgaatcaggtcga
ggatacattataagtggaatatttgaaaatactaacagatcaattgtggttgtaactcaa
agcgatatggaggcaaaaaatctttatgaagatttgatattttatactagtgaggtatat
tattttccagtaaaggaaatggttttctataatattgatgctatctctggagatttgaga
tgggcaagattaaaagtaataaatgaaatattaaataataagaaaaaaataatagtgaca
tcaatagaagcttttgctgcaaaatatactcctcataatttgtttttggaatacagcatg
aaatttaaagaaggcgatgaagttaatcttgccgatatatcaaagaaattaattcaatca
ggttatgaaagagtggaaatggttgagggcaaaggtcaattttcacttagaggaggcata
ttagacgtatttccaacaggttcaacttatccatatagagttgaactttttggcgatgaa
atagaatcaataagaacctttaatacagaatctcaacgaagtattgagaaagttaaaaag
atagatattttcccagcaaaagaagtaatagtttcagaagagatgttagaggttggaaga
aataagcttaaggaagagtttaataaaattgcggaaagtgataaagatagtgaaagagta
gaaaaactaagaaaaatattaaataaaaacttagaactactagaagagacttcgtctttt
gaaacaatagatagttatcttccgtactttaccaaagaaacagaaagtctttttgattat
tttaagaattatttctttatagtagataatgttcaaagatgtaatggaaaattagaatca
acttatttagagtttgaagaaaatttcacagctttttctcaaagaggagatatatttccc
gggcaaggaaatttattaataaataaagaagaagtattagaatcatttgaagatgaaaag
attgcttttatcgaagcattgacaaaagtttctggctggctaaagccactatcaatagta
aatgtagctcaaacaacattaaataactatcaaggtcagctagatttattaattgacgaa
atattaggtaaaaagaatttaggatataagacactaattttatcaggaactcgagctaga
ggggaacgtttagttggaacattaagagatagaggtatagaaagtgtctataaggatact
gttgataaaattgaatatggtgaagttgtaataacttttggtaatcagttgagaggattt
gaatatccccaatataaagtatgtataatatcagataaagaagtatttggtgcggcaaag
agaaaattaaaaagtagtaaagcaaagaaaaagggaatttctaaaatcaagagctttgcg
gaattaaagccgggagattacgtagtacatgcaaatcatggtatcggagtatacaaggga
attaaacaaatagatgttggaggccataaaagagattatttagatattgtttatgataaa
ggcgataaattatatgttccagtagatcaattagatttaattcaaaagtatattggaagt
gaaggaaagtcacctaaagttaataaacttggaagcgctgaatggcaaaaagcaaaagca
aaggcaagaaaatcaataaatgaaatagctgaagatctagttaagctttacgcaatgaga
agtactgtaaaaggacataagttttccaaggatactgaatggcaaaaacaatttgaagat
gagtttccgtttgaagaaactccagaccaattaacatcactagaagaaataaagatagat
atggaatctgataaacctatggatagacttttatgtggagatgttggatatggtaaaaca
gaagttgctataagggctgcatttaaagcagtaatggatggaaaacaagttgctctttta
gttccaactaccattttagcagagcaacattataaaaatataaaaaatagattttcggat
tttccgataaagatagacatggtcagcaggtttaggacggcgaaacagcaaaaagaaata
cttcaaaaggtgaaggaaggtaatttagatattttaataggtactcatagattggtatct
aaagacattcaatttaaagatctgggcttattaatagtagacgaggagcaaaggtttgga
gttaagcaaaaagaaaagattaagggaattaagaaaaatgttgatgttttaactctaagt
gcaactccaattcctagaaccctgcatatgtcgctaagtggagttagggatatttcagtc
atagaaacaccaccagaagaaagataccctgtccaaacatatgttgttgaacaaaatgat
cagcttataagagacgcaattcttagggaaataggtagaggcggccaagtttacttcgta
tacaatagagtggaagatatcgaaaggatggctaagtatgttcaatcgttagttccagag
agtaaggtcggaattgctcatggtcaaatggcagaaagacaacttgagaaggaaatgttt
gactttatgtcagaagagtataacgtattagtctgcactactataatagaaactggaatg
gatattcaaaatgtaaatactataataatatatgatgcagataagatgggactttctcag
ttatatcagcttagaggtagagttggaagatcaaatagaattgcatatgcgtatttgcta
tatactaaggataaagtattaacagaagttgctgaaaaaaggcttaaagcattaaaggat
ttcactgaattgggctctggttttaaaatagctatgagagatttggaaattagaggtgca
ggtaatatgatgggatcttctcaacatggacatatggcctctataggatatgatctgtat
tgcagaatgcttgaagatactgttaaacttcttaaaggtgaaattcaaaaagaacctata
gaaacaaccttagatataaaagtagatgcctttatatcagaaaattatatagaagatgaa
attcaaaaaattgaagtttataagaaaattgctgcaattgagggattagacgattatagt
gatatcaaagaagaactagaagatagatactctaagataccagaacctgtgtataattta
atggatattgcttatataaagagtagagctaaatctatattcattgaagagataaaagaa
actccaaaagaattattgttcaagttttcacaaggtgaaagtgaatataaaaatatattt
aaaatattgatggaaaaatataagaatagcgtagtattaaagtttggttcaaacccttat
ttcgcatttaaattaaaatatattaagaaggaaaataaattggagtttctgaaggaagtt
ttcgatgacataatattgtaa
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