Clostridium beijerinckii NCIMB 8052: Cbei_0145
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Entry
Cbei_0145 CDS
T00547
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbe
Clostridium beijerinckii NCIMB 8052
Pathway
cbe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cbei_0145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbe03021
]
Cbei_0145
03400 DNA repair and recombination proteins [BR:
cbe03400
]
Cbei_0145
Enzymes [BR:
cbe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cbei_0145
Transcription machinery [BR:
cbe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cbei_0145
DNA repair and recombination proteins [BR:
cbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cbei_0145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
SHOCT
Motif
Other DBs
NCBI-ProteinID:
ABR32335
UniProt:
A6LPQ5
LinkDB
All DBs
Position
183352..186888
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDAIQIGLASPEQIRQWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYIVIDPKETPLLKKQLLNEKEYREAVDKYGDESFVAGMGAEAIQDLL
NEIDLVTSSKELKEELKQSSGQKKVRIIRRLEVVESFRKSGNDPQWMVINVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMAIELFKPFVMKKLVQDGIAHNIKSAKRMVERVLPQVWDVLEEVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHLPLSVEAQAEARFLMLAATNI
LKPSDGKPVCVPTQDMILGSYYLTMDKNGAKGDGMTFSSKDEAIMAYEVKEIDIHAQINV
RMFREVDGELKSKIIKTTVGKIIFNESIPQNLGLVNRENEEESFNLEVDFLATKKSLGKI
IDQCYMKHGPVKTSIMLDNIKALGYHYSSIGAVTVASSDIIVPKVKYDLLKEADETIEKI
EKMYKRGFISDEERYERVIEKWTQTTEDVANALMDSLDKFNPIYMMADSGARGSKSQIKQ
LAGMRGLMASPSGKIIELPIRASFKEGLDVIEYFLSTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTDEGIFVSEIKEGNEVIEELRERLIGRYTAEDIVDPETGDVLHP
KNEYMDPYAADKIVSAGIKKVKIRSVFTCKCKVGVCARCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEIAGTARIEET
KKKRTVIVMGADGEERSYDIPFGSRLRVNESDYVEAGDEITEGSVNPHDIMSIKGIDGAR
RYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKIVDSGDTDLLPGTMIDMFDFYEENA
RVREFGGEEAKGEQTLLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKEN
VIIGKLIPAGTGMMRYRSLKVETDSELVEETIGETVEE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataatttcgatgcaatacaaattggtttagcatctccagaacaaata
agacagtggtcaagaggagaagttaaaaaaccagaaactattaactataggactttaaaa
ccagagagagatggtttattctgtgaaagaatttttggaccaatgaaagattgggaatgt
cactgtggaaagtataagagagtaagatataaagggatagtttgtgatagatgtggagtt
gaagtcacaaaagctaaagtaagaagagaaagaatggggcatatagaattagctgcccca
gtatctcatatttggtattttaagggaattccatcaagaatgggattaattttagatatg
tcgccaagagctttggaaaaagttctgtattttgcatcttatatagtgatagatcctaag
gaaacaccattattaaagaaacaacttctcaatgaaaaggaatatagagaagctgtagat
aaatatggcgatgaaagctttgtagcaggcatgggagcagaggcaattcaagatttacta
aatgaaattgatttagtaacttcttcaaaagaacttaaagaagaattaaagcaaagttcg
ggacaaaagaaagttagaataattagaagactagaagttgtagagtcatttagaaaatca
ggtaatgatccacagtggatggttataaatgtaataccagtaattccaccggatttaaga
cctatggttcaattagatggaggaagatttgcgacatctgatttaaatgatttatataga
agagtaataaacagaaataacagattaaagaagttattagatttaggcgctccagatata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctcttattgacaatggt
agaagaggcagaccggtaactggaccaggaaatagacctttgaaatctctttcagatatg
ttaaaaggtaaacagggtagatttagacagaacttacttggtaagagagttgactactca
ggtagatcggttattgttgttggcccagaacttaaaatgtatcaatgcggacttcctaag
gaaatggcaatagaattatttaaaccatttgttatgaaaaagcttgtacaagatggcata
gctcataatataaagagtgccaagagaatggttgagagagtattaccacaagtatgggat
gtattagaagaagtaattgcagatcatccagtattacttaaccgtgcacctactctacac
agacttggtattcaagcgttccaacctgtattagtagaaggtagagcaataaaacttcat
ccgttagcatgtacagcttataatgctgacttcgatggagaccaaatggctgtccatctt
ccattatcagtagaggctcaagctgaagctagatttttaatgttagctgcaacaaatatt
ctaaaaccatcagatggtaaaccggtttgtgtacctacacaagatatgattctaggatca
tattatttaacaatggataaaaatggagctaaaggcgatggtatgacattctcaagcaaa
gatgaagctataatggcgtatgaagttaaagaaattgacatacatgctcaaataaatgtt
agaatgtttagagaagtcgatggagaattgaaatctaagattattaaaactactgttgga
aagattatatttaatgaatcaattccacaaaatcttggattagtaaatagagaaaatgaa
gaagaatcatttaatctagaagttgatttcttagctacgaaaaagtcgttaggaaagata
atcgatcaatgttatatgaagcatggtccggttaaaacatctataatgcttgataatatt
aaagcattggggtatcattattcatcaatcggggctgtaacagttgcttcatcagatata
atagttccaaaagtgaaatatgatttacttaaggaagcagatgaaacgatcgaaaagatt
gaaaagatgtataagagaggtttcatatctgatgaagaaagatatgaaagagttatagaa
aaatggactcagacaactgaagatgtagccaatgcattaatggatagtcttgataaattt
aatccgatatatatgatggctgattctggagccagaggatcaaaatctcagatcaagcag
ttagctggtatgagaggtcttatggccagtccatcaggtaagattatagagttacctata
agggcatcatttaaagaaggattagatgtaatagaatatttcttatcaacacatggagct
agaaagggtaatgcagatacagccttaaagactgcggattctggatatctaactagaaga
cttgttgatgtttcacaagatgttattgtaagagaagaagattgtggcacagatgaagga
atatttgtaagtgaaattaaagaaggtaacgaagttatcgaggaattaagagaaagatta
attggtagatatacagcagaagatattgttgatccggaaactggggatgtattacatccg
aagaatgaatatatggatccatatgccgctgataagatagtttctgcaggaattaagaaa
gtgaagattagatccgtattcacttgtaagtgtaaagttggtgtatgtgctagatgctat
ggtatgaatatggcgacagctaaaaagattgatattggagaagctgttggaataatagcg
gctcaatcaattggagaaccaggaacacagcttacaatgagaacattccatactggtgga
gttgcaggagcagatattactcaaggtttacctagagttgaggagctatttgaggctaga
aaaccgaaggggcttgcaatagtaagtgaaattgctggtactgcgagaatagaagaaact
aaaaagaaaagaacagtaatagttatgggtgccgatggagaagaacgtagctacgatata
ccttttggatcaagattgagagttaatgaaagtgattatgttgaagctggagatgaaatc
acagaaggttcggtaaatcctcatgatataatgagcataaaaggaatagatggagcgaga
agatacttactttcagaggttcaaaaagtttatagactacaaggtgttgatattaatgat
aaacacttagaagttgttgttagacaaatgactagaaagataaaaatcgttgattcaggt
gacacggatttattaccaggaactatgattgatatgtttgatttctatgaagaaaatgct
agagtaagagaatttggtggagaagaagcaaaaggagaacaaactctactaggtataact
aaggcagcattagcaactgatagtttcctatcagcagcttcgttccaagaaacgacaaga
gttctaacagaagcagcaattaaaggaaaagttgatcctttagttggattaaaagaaaat
gtaataattggtaagcttattccagctggtactggaatgatgagatatagatctttaaag
gtggaaacagatagtgaattagttgaagaaactattggagaaactgttgaagaataa
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