Clostridium beijerinckii NCIMB 8052: Cbei_3556
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Entry
Cbei_3556 CDS
T00547
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cbe
Clostridium beijerinckii NCIMB 8052
Brite
KEGG Orthology (KO) [BR:
cbe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cbe03016
]
Cbei_3556
Enzymes [BR:
cbe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cbei_3556
Transfer RNA biogenesis [BR:
cbe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cbei_3556
Prokaryotic type
tRNA splicing ligases
Cbei_3556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABR35678
UniProt:
A6LZ98
LinkDB
All DBs
Position
complement(4103383..4104606)
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AA seq
407 aa
AA seq
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MIEVKGKYNTAKVFTDNIETEAIEQLKELCNQPFVEGCKVRIMPDTHKGASCVIGFIADL
GDKVIPNIVGVDIGCGMLTVNLGIVDVDLEKLDEIIHKYIPSGMNVHEGRVVRFPELQNL
KCYRSLKNTKRIERSIGTLGGGNHFIEINECADGIKYLVIHSGSRNLGTQVASIYQNLAI
DLCSGKGDYFVKREKIISEYKADGRRKEIQKALKDLEALYNELMPSYPKELCFLSGDYRK
DYLHDMNICQEYAVLNRNTMADIILKKLFGKGFDEFEAFSTTHNYINFKDNIIRKGSISA
YEGEKVLIPLNMRDGSIIAIGKGDPDWNYSAPHGAGRIMSRTKAKEKVNLEEFKASMEGI
FTTSVTEETIDEAPMVYKPKEEILENISETVDIIEIIKPIYNFKAQG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagttaaaggaaaatataatactgcaaaagtatttacagataatatagaaaca
gaagcaattgaacaattaaaagaattatgtaatcaaccttttgtagagggctgtaaggtt
agaataatgcctgatacacataaaggggcaagttgtgttattggatttatagctgatttg
ggtgataaagtcattcctaatattgtaggagttgatattggatgcgggatgttaactgta
aatttaggaatagtagatgttgatttagaaaagctagatgagattatccataaatatatt
ccatcaggaatgaatgtccatgaaggaagagtagttagatttccagaattacaaaattta
aaatgttataggagcttgaaaaatactaaaagaattgaaagaagtatcggcactttaggt
ggaggaaatcactttattgaaataaatgaatgtgctgatggcataaagtatcttgtgatt
cattcaggaagtagaaatttagggacacaagttgctagtatttatcaaaatcttgcaata
gatttatgcagtggtaaaggtgattactttgttaaaagagaaaaaataattagtgaatat
aaagctgatggacgtagaaaagaaatccagaaagctttaaaagatttagaagcactatat
aatgaactaatgccaagctacccaaaagagttgtgctttttaagtggagattataggaag
gattatctacatgatatgaatatttgccaagaatatgctgtcttaaatagaaacacaatg
gcagatataattttgaaaaagctgtttggaaaaggttttgatgaatttgaagcattttct
actacccataattatataaacttcaaagacaatataattagaaaaggaagtatttccgcc
tatgaaggagaaaaagtattaattccacttaatatgagagatggaagcataattgcaata
ggaaaaggagatccagattggaattactcagcaccacatggggcaggtcgtattatgagc
aggactaaagctaaggaaaaagtcaatttggaagaatttaaggcttcaatggaagggatt
tttacaacttcagttacagaagagacaattgatgaagctccaatggtgtataagcctaag
gaagaaatacttgaaaatatttctgaaactgttgatattattgaaataatcaaaccaatt
tataattttaaagctcaagggtaa
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