Clostridium beijerinckii NCIMB 14988: LF65_00182
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Entry
LF65_00182 CDS
T04773
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF65_00182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cbei03021
]
LF65_00182
03400 DNA repair and recombination proteins [BR:
cbei03400
]
LF65_00182
Enzymes [BR:
cbei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF65_00182
Transcription machinery [BR:
cbei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF65_00182
DNA repair and recombination proteins [BR:
cbei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF65_00182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
SHOCT
Motif
Other DBs
NCBI-ProteinID:
AJG96859
UniProt:
A0A0B5Q3V1
LinkDB
All DBs
Position
187107..190643
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDAIQIGLASPEQIRQWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYIVIDPKETPLLKKQLLNEKEYREAVDKYGDESFVAGMGAEAIQDLL
NEIDLVTSSKELKEELKQSSGQKKVRIIRRLEVVESFRKSGNDPQWMVINVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMAIELFKPFVMKKLVQDGIAHNIKSAKRMVERVLPQVWDVLEEVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLACTAYNADFDGDQMAVHLPLSVEAQAEARFLMLAATNI
LKPSDGKPVCVPTQDMILGSYYLTMDKNGAKGDGMTFSSKDEAIMAYEVKEIDIHAQINV
RMFREVDGELKSKIIKTTVGKIIFNESIPQNLGLINRENEEESFNLEVDFLATKKSLGKI
IDQCYMKHGPVKTSIMLDNIKALGYHYSSIGAVTVASSDIIVPKVKYDLLKEADETIEKI
EKMYKRGFISDEERYERVIEKWTQTTEDVANALMDSLDKFNPIYMMADSGARGSKSQIKQ
LAGMRGLMASPSGKIIELPIRASFKEGLDVIEYFLSTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREEDCGTDEGIFVSEIKEGNEVIEELRERLIGRYTAEDIVDPETGDVLHP
KNEYMDPYAADKIVSAGIKKVKIRSVFTCKCKVGVCARCYGMNMATAKKIDIGEAVGIIA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEIAGTARIEET
KKKRTVIVMGADGEERSYDIPFGSRLRVNESDYVEAGDEITEGSVNPHDIMSIKGIDGAR
RYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKIVDSGDTDLLPGTMIDMFDFYEENA
RVREFGGEEAKGEQTLLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKEN
VIIGKLIPAGTGMMRYRSLKVETDSELVEETIGETVEE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcaatacaaattggcttagcatctccagaacaaata
agacaatggtcaagaggagaagttaagaaaccagaaactattaactatagaactttaaaa
ccagagagagatggtttattctgcgaaagaatttttggaccaatgaaagattgggaatgt
cactgtggaaagtacaaaagagtaagatataaagggatagtttgtgatagatgtggagtt
gaagtcacaaaagctaaagtgagaagagaaagaatggggcatatagaattagctgcccca
gtatctcatatttggtactttaaaggaattccatcaagaatgggattgattttagatatg
tcgccaagagctttggaaaaagttttatattttgcatcttatatagtgatagatccgaag
gaaacaccactattgaagaagcagcttcttaatgaaaaggaatatagagaagctgtagat
aaatatggagatgaaagctttgtagcaggcatgggagctgaagcaattcaagatttacta
aatgaaattgatttagtaacttcttcaaaagaacttaaagaagaattaaagcaaagttcg
ggacaaaagaaagttagaattattagaagactagaagttgtagaatcgtttagaaaatca
ggcaatgatccacagtggatggtcataaatgtgataccagtaattccaccggatttaaga
cctatggttcaattagatggaggaagatttgcaacatctgatttaaatgatttatataga
agagtaataaacagaaataacagattaaagaagttattagatttaggcgctccagatata
attgtaagaaatgaaaaaagaatgcttcaagaagcagtagatgctcttattgacaatggt
agaagaggcagaccggtaactggaccaggaaatagacctttgaaatctctttcagatatg
ttaaaaggtaaacagggtagatttagacagaacttacttggtaagagagttgactactca
ggtagatcggttattgttgttggtccagaacttaaaatgtatcaatgcggacttcctaag
gaaatggcaatagaattatttaaaccatttgttatgaaaaagcttgtacaagatggcata
gctcataatataaagagtgccaagagaatggttgagagagtattaccacaagtatgggat
gtattagaagaagtaattgcagatcatccagtattacttaaccgtgcacctactctacac
agacttggtattcaagcgttccaacctgtattagtagaaggtagagcaataaaacttcat
ccgttagcatgtacagcttataatgctgacttcgatggagaccaaatggctgttcatctt
ccattatcagtagaggctcaagctgaagctagatttttaatgttagctgcaacaaatatt
ctaaaaccatcagatggtaaaccggtttgtgtacctacacaagatatgattctaggatca
tattatttaacaatggataaaaatggagctaaaggcgatggtatgacattctcaagcaaa
gatgaagctataatggcgtatgaagttaaagaaattgacatacatgctcaaataaatgtt
agaatgtttagagaagtcgatggagaattgaaatctaagattattaaaactactgttgga
aagattatatttaatgaatcaattccacaaaatcttggattaataaatagagaaaatgaa
gaagaatcatttaatctagaagttgatttcttagctacgaaaaagtcgttaggaaagata
atcgatcaatgttatatgaagcatggtccggttaaaacatctataatgcttgataatatt
aaagccttggggtatcattattcatcaatcggggctgtaacagttgcttcatcagatata
atagttccaaaagtgaaatatgatttacttaaggaagcagatgaaacgatcgaaaagatt
gaaaagatgtataagagaggtttcatatctgatgaagaaagatatgaaagagttatagaa
aaatggactcagacaactgaagatgtagccaatgcattaatggatagtcttgataaattt
aatccgatatatatgatggctgattctggagccagaggatcaaaatctcagatcaagcag
ttagctggtatgagaggtcttatggccagtccatcaggtaagattatagagttacctata
agggcatcatttaaagaaggattagatgtaatagaatatttcttatcaacacatggagct
agaaagggtaatgcagatacagccttaaagactgcggattctggatatctaactagaaga
cttgttgatgtttcacaagatgttattgtaagagaagaagattgtggcacagatgaagga
atatttgtaagtgaaattaaagaaggtaacgaagttatcgaggaattaagagaaagatta
attggtagatatacagcagaagatattgttgatccggaaactggggatgtattacatcca
aagaatgaatatatggatccatatgccgctgataagatagtttctgcaggaattaagaaa
gtgaagattagatccgtattcacttgtaagtgtaaagttggtgtatgtgctagatgttat
ggtatgaatatggcgacagctaaaaagattgatattggagaagctgttggaataatagcg
gctcaatcaattggagaaccaggaacacagcttacaatgagaacattccatactggtgga
gttgcaggagcagatattactcaaggtttacctagagttgaggagctatttgaggctaga
aaaccgaaggggcttgcaatagtaagtgaaattgctggtactgcgagaatagaagaaact
aaaaagaaaagaacagtaatagttatgggtgccgatggagaagaacgtagctacgatata
ccttttggatcaagattgagagttaatgaaagtgattatgttgaagctggagatgaaatc
acagaaggttcagtaaatcctcatgatataatgagcataaaaggaatagatggagcgaga
agatacttactttcagaggttcaaaaagtttatagactacaaggtgttgatattaatgat
aaacacttagaagttgttgttagacaaatgactagaaagataaaaattgttgattcaggt
gacactgatctattaccaggaactatgattgatatgtttgatttctatgaagaaaatgct
agagtaagagaatttggtggagaagaagcaaaaggagaacaaactctactaggtataact
aaggcagcattagcaactgatagtttcctatcagcagcttcgttccaagaaacgacaaga
gttctaacagaagcagcaattaaaggaaaagttgatcctttagttggattaaaagaaaat
gtaataattggtaagcttattccagctggtactggaatgatgagatatagatctttaaag
gtggaaacagatagtgaattagttgaagaaactattggagaaactgttgaagaataa
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