Clostridium beijerinckii NCIMB 14988: LF65_01982
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Entry
LF65_01982 CDS
T04773
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF65_01982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbei03019
]
LF65_01982
03009 Ribosome biogenesis [BR:
cbei03009
]
LF65_01982
Enzymes [BR:
cbei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LF65_01982
Messenger RNA biogenesis [BR:
cbei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF65_01982
Ribosome biogenesis [BR:
cbei03009
]
Prokaryotic type
rRNA helicases
LF65_01982
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
NAT10_TcmA_helicase
Pro-kuma_activ
Motif
Other DBs
NCBI-ProteinID:
AJG98580
UniProt:
A0A0B5QCB4
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All DBs
Position
2192869..2194311
Genome browser
AA seq
480 aa
AA seq
DB search
MNNKFTKFNISDEILKSIEGLGYKTPSKVQEKVIPEILMNKDIIVKSQTGSGKTAAFGIP
LCEKVDWNENIPQILILTPTRELAVQVSEDITNIGRFKRIKAVSVFGKEPISEQERKLRQ
KTHVVVGTPGRIIDHLDRGTLNVDKIRYFVIDEADEMLNMGFIGQVEGIIRRLPKKKVTM
LFSATIPEEIKVLCDKHMNKPIDISIKNQEITNENIDHSLYYIDYEEKIEKLNDILIMEK
PETAVIFAKTKDNVDTVFQWLKSKGYSVNKIHGGMLQNERLSIMDRFRAGDFRILVSTDL
ASRGIDVKGITHVINYDLPVEKEAYVHRIGRTGRAGEKGKAISFCVKGKDKLLNEIEEFI
GFEIPVYNLPDKRVIEKEREESIKTLKSRPKMKEQRSKDINNNITKIYLNGGKKKKIRPG
DIVGAICKIEGIRSEDIGIIDVQDSVSYVDILNGKGKRVIEELKNITIKGKIIKAEKAKK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaacaataaattcactaaatttaacataagtgatgaaatattaaagtcaatcgagggg
cttgggtataaaactccatcaaaggttcaagaaaaagttataccagaaatacttatgaat
aaagatatcatagttaaatcacaaacaggaagtggaaagacagcagcttttgggattcct
ttatgtgagaaagtagattggaatgaaaacattccacagattttaatattgacaccgact
agagaacttgctgttcaagtaagcgaagatataactaatataggaaggtttaaaagaata
aaagctgtttcagtttttggtaaagagcctatctctgaacaggagagaaaattgaggcaa
aagacgcacgtagtagttggaactccaggaagaattatagatcacttggatagagggacc
cttaatgtagataaaattagatattttgttatagatgaagctgatgaaatgcttaatatg
ggatttatagggcaagttgaaggaataattagaagacttccaaagaaaaaagttactatg
ttgttttcagcaacaataccagaggaaataaaagtattatgtgataaacatatgaataag
cctatagatataagtattaaaaatcaagaaatcactaacgaaaatatagaccatagttta
tattatattgactatgaagaaaaaatagaaaaactaaatgatattttaataatggagaaa
cctgagacagctgtcatatttgcgaaaactaaagataatgtagacacagtttttcaatgg
ttaaaatctaaagggtactctgtaaataaaatacatggaggaatgcttcaaaatgaaaga
ttaagcattatggatagatttagagcaggtgattttagaatacttgtatcaacagactta
gcttcaagaggaattgatgttaaaggaatcactcatgtaataaattacgatcttccggta
gagaaggaagcatatgtacatagaatagggagaacaggaagagctggtgagaaaggaaag
gcaataagcttctgcgttaagggaaaggataagcttttgaacgaaattgaagagtttatt
gggtttgaaattcctgtctataatttacctgataaaagggtaattgaaaaagaaagagaa
gagagtattaaaacgcttaaaagtagacctaaaatgaaagaacaaagatcaaaagatata
aataataacataacaaaaatttatttgaatggaggcaaaaaaaagaaaattcgccctgga
gacatagttggtgctatttgtaaaatagagggcattagatctgaagatattggaataata
gatgtccaggattcggtatcctatgttgatatattaaatggaaaaggaaaaagagttata
gaagagttaaaaaatataactataaaaggtaaaattattaaagctgaaaaagcaaaaaag
taa
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