Clostridium beijerinckii NCIMB 14988: LF65_01984
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Entry
LF65_01984 CDS
T04773
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF65_01984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbei03019
]
LF65_01984
03400 DNA repair and recombination proteins [BR:
cbei03400
]
LF65_01984
Enzymes [BR:
cbei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF65_01984
Messenger RNA biogenesis [BR:
cbei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF65_01984
DNA repair and recombination proteins [BR:
cbei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF65_01984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJG98582
UniProt:
A0A0B5QKX5
LinkDB
All DBs
Position
2195576..2198026
Genome browser
AA seq
816 aa
AA seq
DB search
MDNVALNYLEKYYGYKSFRKGQEDIISKIINGEDVLAIMPTGGGKSICYQIPALMLEGIT
IVISPLISLMKDQVDTLKDMGIKGALINSTLSAIEEKEVINNLENSEIKILYIAPERLES
FEFLSVISKCNISQIAIDEAHCISQWGHDFRGSYRKISNFISLLQKKPIITAFTATASQE
VREDIINLLKLNNPKVFITGFDRENLSISVIKSGNKKEYLYKYIENNKEVSGIIYAATRK
EVNNLYESLQAKGYNVTCYHAGLSENTRKENQENFIYDRAGIMIATNAFGMGIDKPNIRY
VVHYNMPRNIESYYQEIGRAGRDGEKSECVLLFSPQDVQVQKYLIENSIEDVERKNNQYR
KLQQMMDFVYSNYCYRKYVLEYFGETYNGQCDNCSNCLSEGEFVDKTIEAQKVLSCIYRM
KVKFGIGMLVDVLRGSKNKKVIQFHFNELSTYGLMKEYSAEDLKNFINTLISHGYINVVE
GTYPVLSLNDRSRRVLTSQEKVQLKEFRVEKKASEENELFEILRNLRQELAKENNVPPYI
IFGDVTLKEMTVNYPISKYEMLKVSGVGEVKYNKYGKVFEDVIRNFVEEHEIAIPDHDEG
LLDEQKSINKDEESRVEVKTDLELYERLDNARKEFAKEERALSQAILTMNTLKEISGRCP
SSLDELKDITGMGPKKISLYGEKIINVVNEYLSENDKKVEWIERKRRKVIIDGETRENDQ
ISIDMLKQNITIHEVSQKLEISISTILGYVTDYIKEFGENAFHINLEEFYNKEDEKLIID
ACQKHGYDKINVLKKELPSHIKYESIRAVILKKYYL
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggataatgtagctttaaattatttggagaaatattatggatataagtcatttagaaaa
gggcaagaagacataataagtaaaataataaatggagaagatgtacttgctataatgcca
actggaggaggaaagtcaatttgttatcagataccagcattgatgctagaaggaataaca
atagtaatttctcctctaatatccctaatgaaagatcaagtagatacgctaaaagatatg
gggataaaaggcgctttaataaatagtacattgagtgctatagaagaaaaagaagtaata
aacaatttggaaaatagtgaaataaagattctttatatagctcctgaaagattagaatct
tttgagtttttgagtgttatttctaaatgtaatatttctcaaatagctatagatgaagct
cattgtatttctcaatggggacatgattttaggggaagttatagaaaaatatcaaatttt
ataagtttacttcaaaagaaacctataataacagcatttactgcaactgcatcacaggaa
gtgagagaagatataataaatcttcttaaattgaataatccaaaagtctttataacaggt
tttgatagagaaaacttatctatcagcgtgattaaaagtggtaacaaaaaggaatattta
tataaatatatagaaaacaataaagaagtttcaggcattatatatgctgcaactaggaaa
gaagtcaataatttatatgaatctttgcaagcgaaagggtataatgtgacttgctatcat
gcgggactatctgaaaatactagaaaagaaaatcaagaaaattttatatatgatagagct
ggtattatgatagcaaccaatgcttttggaatggggatagacaaacctaatataagatat
gttgtacactataatatgccaagaaatattgaaagttactatcaagagattggaagagca
ggaagagatggagaaaagagcgaatgcgtattattattttcgcctcaagatgttcaggtc
caaaagtatttaatagaaaactcaatagaagatgtagagagaaagaacaatcaatataga
aagcttcaacaaatgatggattttgtatatagcaattattgctatagaaaatacgttttg
gagtattttggagaaacatataatgggcaatgtgataattgcagtaattgtttgagtgaa
ggagagtttgttgataagacaatagaagcgcaaaaagttctttcatgtatatacaggatg
aaagttaaatttggaattggaatgcttgtagatgtgcttagaggatctaaaaataaaaaa
gttattcaatttcattttaacgagctttctacttatggattaatgaaagaatattcagca
gaagatctcaaaaactttattaatacattgatttctcatggatatattaatgtggttgaa
ggtacatatccagtgttgagtttaaatgatagatcaagaagagtattaacatctcaagaa
aaagttcaattaaaagagtttagagtagaaaagaaagctagtgaagaaaatgaacttttt
gagattcttagaaatttaagacaagaactggcaaaggaaaacaatgttccaccatatata
atattcggtgacgttacactaaaagaaatgactgtaaattatccgatatcaaaatatgaa
atgcttaaagtttctggagttggagaagttaaatataataaatacggaaaagtatttgaa
gatgtaatacggaattttgtagaagaacatgaaattgctatacctgatcatgatgaaggt
ttgctagacgaacaaaagagtataaataaagatgaagaatctagagtagaagttaaaaca
gacttagaattatacgagagattagacaatgcaagaaaagaattcgctaaagaagaaaga
gcattatcccaagcaatactgacaatgaatactctaaaggaaataagtggaagatgcccg
agttctctagatgaattaaaagatataacaggcatgggacccaagaaaataagtttgtat
ggagaaaagataataaatgtagtaaacgaatatttgtcagaaaatgataaaaaagtagaa
tggattgaaagaaaaagaagaaaggttataattgatggagagactagggagaatgatcaa
atctcaatagatatgcttaagcagaacataactatacatgaagtatctcaaaaattagag
atctcaatttcaactatcctaggatatgtaacagattatataaaagagtttggagaaaat
gcatttcatataaatttagaagaattttacaataaagaagatgaaaagctaataatagat
gcatgccaaaagcatggatatgataagataaatgtactaaaaaaagaactaccttcacat
ataaaatatgaaagcataagagctgtaattttaaaaaagtactatttgtag
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