Clostridium beijerinckii NCIMB 14988: LF65_02524
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Entry
LF65_02524 CDS
T04773
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF65_02524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbei03019
]
LF65_02524
03009 Ribosome biogenesis [BR:
cbei03009
]
LF65_02524
Enzymes [BR:
cbei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LF65_02524
Messenger RNA biogenesis [BR:
cbei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF65_02524
Ribosome biogenesis [BR:
cbei03009
]
Prokaryotic type
rRNA helicases
LF65_02524
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Ferritin_2
Motif
Other DBs
NCBI-ProteinID:
AJG99106
UniProt:
A0A0B5QLK1
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All DBs
Position
2742263..2743837
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AA seq
524 aa
AA seq
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MGNKVFSELGLDESILKAIDAMGFEEPSKIQAEVIPVLLEGHDVIGQAQTGTGKTLAFGA
PILSRIGKQDGKVNSIILTPTRELAIQVNDELNRIAKFTKIKLLPVYGGQPIDRQISALR
RGIDIVVGTPGRVLDLIRRKVLNLSSIRFLVLDEADEMLNMGFIDDIEEIIKNSNQDRQT
MLFSATMPEEIKRLAKRYMKSETKHIAILKNAMTVATVDQYYYEIKNKDRFETLCRILDV
DEPTSAIIFCKTKRNVDELVEGLQGRGYTAEGMHGDMNQNQRINTLRKFKEGNLEFLIAT
DVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANRKGVAYTLVTAREYMSLKHIEK
VTKSKIRRREIPTVDEIFISKYKNMFSKIKETLEQDSYKKFIPMATELDEEFNLVEVAAA
LMDMVYSKEVNYDYTENEIGSKTDYKRLFLTVGRLDKINPRKLVDFFNETANVKREDVGD
IDILEKFSFVNVTEAAAESIMKHCTGKKFAGRKLNVEISTKSKR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaataaggtatttagcgaattaggtcttgatgagagtattcttaaggctattgat
gcaatgggatttgaagaaccttctaagattcaagctgaggtaataccagttcttttagaa
ggtcatgatgttattgggcaggcacaaacaggaacaggaaagacactggcatttggtgca
ccaatattaagcagaattggaaagcaagatggtaaggtaaatagtataatactaacgcct
acaagagaacttgctatacaggtaaatgatgaattgaatcgtatagctaaatttactaag
attaagttgcttcctgtatacggtgggcaacctattgacaggcagatctcagctttacgt
agagggatagatatagtagtaggaactccgggtagagtgttggatttaataagaagaaaa
gttttaaatttgagctctattagatttcttgtattggatgaagcggacgaaatgttaaac
atgggatttattgacgatatagaagaaataataaaaaattcaaatcaagacagacagaca
atgttgttttcagctactatgcctgaagaaatcaaaagacttgctaaaagatatatgaaa
tctgaaacgaaacacatagctattttaaaaaatgcaatgactgtagctacagtggatcaa
tactattatgaaattaaaaacaaggataggtttgaaacactatgtaggatactggatgtt
gatgaacctacatctgcaataatcttttgtaagaccaaaaggaacgttgatgaactggta
gaaggtcttcagggaagagggtatactgctgaaggaatgcatggagatatgaatcaaaat
cagagaataaataccttaagaaaatttaaagaaggaaatttagaattccttatagcaact
gatgttgctgcaagaggtatagatgttgaaaatgtaactcacgtaataaattacgatttg
cctcaggacgtagaatcctatgttcacagaataggcagaacaggtagagcaaatagaaaa
ggtgttgcttacacattagttactgcaagggaatatatgtctcttaagcatattgaaaag
gtgacaaaaagcaagataagaagaagagaaattcctactgttgatgaaatatttatttca
aagtacaaaaatatgttttcaaagataaaggaaactttggagcaggatagctataagaaa
tttataccgatggcaacagaacttgatgaagagtttaacctcgtagaagtagcagcggca
ttaatggatatggtatatagcaaagaagtgaattatgactatactgaaaatgaaataggt
tcaaagacagattacaagaggttatttttgactgtaggacgcttggataagattaatcca
aggaagctagtggatttctttaatgagactgcaaatgtaaaaagagaagatgtcggagat
attgatattctagaaaaattttcatttgtaaatgtaacagaggctgcagcggaatccata
atgaagcattgcactggaaagaaatttgctggaagaaagctaaatgtcgaaatttcaaca
aaatcaaaaagataa
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