Clostridium beijerinckii NCIMB 14988: LF65_02671
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Entry
LF65_02671 CDS
T04773
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF65_02671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbei03019
]
LF65_02671
03400 DNA repair and recombination proteins [BR:
cbei03400
]
LF65_02671
Enzymes [BR:
cbei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF65_02671
Messenger RNA biogenesis [BR:
cbei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF65_02671
DNA repair and recombination proteins [BR:
cbei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF65_02671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AJG99244
UniProt:
A0A0B5QAK7
LinkDB
All DBs
Position
2927380..2929815
Genome browser
AA seq
811 aa
AA seq
DB search
MNNDIHLLVEKAINGESNEIFHIDLSKVGEVDQYKYSTAIRLLKSWDKQKVDKKYRSDFE
CSLKNYLLLMKKEIVICGYEPSKEFSKLVLNMDNNSGEIWATSLLPNFLNEYHVKKLYMQ
DVPEKKVDNIHNLVTNSFVQNLTGFAMFKSHEQKLAVMGALKTPKGYTCLVSMSTGGGKS
LITQTLAYQNKGLSVVIVPTISLMIDQYKNAKNIINPKTEEEMFYYYSGCDLTKFYNSLK
EKKARLLFVSPESLIKNSKLRESIEKANNEGYLKNLIIDEAHIIIEWGSAFRIDFQCLDA
MRNKLLCVNKDLRTFLLSATYSDETIRQLKMFYSNEDNWIEIRCDRLRHETRFDIIRCAS
YSEKNKKIEESIRALPRPMIVYVKSPDDAERLKNQLCEYGYNNVHTFTGNTNKSQREKLI
DSWKNNEFDLMIATCAFGVGVDKKDIRTVLHTYIPENPNKYYQEAGRGGRDGLPCLSTVI
YVDQDIDSAFSFVSKVITTEKLRGRWFSMLNSSKTQSLLNGKYLIDTYIKPNYNANEEFI
DSISNQDVNWNVYVVLFLRRNGLLSIDEIQYLDDKYLFYITIKDRQILINDDNTQKIMDE
IRDAEWKKLEYEFMLMKKNLQKVGKSCWSSMFNKIYRKTDEYCAGCNEHIETIDFEDSKS
LKKNIDFPLACIGSEIKDFSYDSKCMLIINKTDILYFFVQIIEKGIDVIVADNGFISQLI
NENISCNRSLLYCNYMDFFELTTSNKYFASGSIAIYIPDDDSIRKKIIGIIENNTTKYEI
EYILFADRDYYLSFKNKNLSEVINGPCKQEY
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgatatacatttgcttgtagaaaaggcgattaatggagaaagtaacgagata
tttcatattgatttatcaaaagtgggcgaagtagaccaatataaatattcgacagcaatt
cgcttattgaaaagttgggacaaacaaaaagttgataagaagtataggtcagattttgaa
tgttcattaaaaaactatttgttattgatgaaaaaagaaatagttatttgcggatacgaa
ccatccaaagaattttcaaagcttgtattaaatatggataataactcaggggaaatttgg
gcaacatcactcctaccgaattttctgaatgagtatcatgtaaaaaaattatatatgcaa
gacgttcctgaaaaaaaagttgataatatacataatttagtaacaaattcatttgttcaa
aatttaacaggatttgctatgtttaaaagtcatgaacagaagcttgcagtaatgggggca
ttaaagactccaaaaggatatacatgtttagtgtcaatgtcaacaggaggaggtaaaagc
ttaattactcagactcttgcatatcagaataaaggtctatcagttgttatagttcctacg
atatcacttatgattgatcagtataaaaatgcaaagaatataattaatcctaaaacagaa
gaagagatgttttattactatagtggatgtgatttaactaaattttataatagtttaaaa
gaaaaaaaagcacgtttattatttgtatcacctgagagcttaattaaaaatagtaagtta
agagaaagtatagagaaggcaaataatgaagggtatttgaaaaatctgattattgatgaa
gcacatattattattgaatggggatcagcttttagaattgattttcaatgtcttgatgct
atgagaaataaattgttatgtgtaaataaagacttaagaacatttttattgtctgctacg
tatagcgatgaaactatacgacaattaaaaatgttttattctaatgaagataattggata
gagatacgctgtgatcgtttaaggcatgaaactagatttgatattattagatgcgcatca
tatagtgagaaaaataaaaaaattgaagaatcaattagagcgttgccacgtccaatgatc
gtttatgttaaatcacctgatgatgcagagcggttgaagaatcaattatgtgaatatggg
tacaataatgtacatacttttacagggaatacaaataaaagtcagagagaaaaattgata
gattcatggaaaaataatgaatttgacttaatgattgctacttgtgcatttggtgtaggt
gtagataaaaaagatattcgaactgttttacatacatatattccagaaaaccctaataag
tattatcaagaagctggcagaggtggaagagatggtttaccttgtttgagtacagttatt
tatgtcgatcaagatatagactcagcgttctcttttgttagcaaggttattacaacagaa
aaattaagaggtagatggtttagtatgttaaatagttccaaaacacaatcgttattaaat
ggaaaatatctaatagatacatatattaaaccaaattacaatgctaatgaagagtttata
gattctataagtaatcaagatgtaaattggaatgtatatgttgttttgttcttgcgtaga
aatgggttactttcgattgatgagatacaatatttagatgataaatatctgttttatata
acgataaaagataggcaaattcttattaacgatgataatacacaaaaaataatggacgag
attagagacgctgagtggaagaagctcgaatatgagtttatgcttatgaaaaagaatctt
cagaaagtaggaaaatcttgttggtcatcaatgtttaataagatatatagaaaaactgat
gagtattgtgcaggatgtaatgaacatattgaaacaattgattttgaagattccaaatca
ctaaagaagaatatagattttccattggcatgtataggtagcgaaattaaagatttttca
tacgactccaaatgtatgctaattattaataaaacagatatattatatttttttgttcaa
ataatagaaaaaggaattgatgtaattgtagcagataatggttttattagtcagcttata
aatgaaaatatatcatgcaatagaagtttattgtattgtaattatatggatttctttgaa
cttacaacatcaaacaaatattttgcgtcaggttcaattgcaatctatattcctgacgat
gattctattaggaaaaaaattataggcattatcgagaataatacaacaaagtatgaaata
gaatacattttgtttgctgatagagattattatttatcgtttaaaaacaaaaatttatct
gaagtgattaatggaccttgtaagcaagaatattaa
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