Clostridium beijerinckii NCIMB 14988: LF65_02691
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Entry
LF65_02691 CDS
T04773
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF65_02691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbei03019
]
LF65_02691
03009 Ribosome biogenesis [BR:
cbei03009
]
LF65_02691
Enzymes [BR:
cbei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LF65_02691
Messenger RNA biogenesis [BR:
cbei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF65_02691
Ribosome biogenesis [BR:
cbei03009
]
Prokaryotic type
rRNA helicases
LF65_02691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
UvrD-helicase
mRNA_decap_C
Motif
Other DBs
NCBI-ProteinID:
AJG99264
UniProt:
A0A0B5QAM6
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All DBs
Position
2957040..2958485
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AA seq
481 aa
AA seq
DB search
MIKTNFNDYKLCNELLKAISMLNFNELTKVQEQVIPIALEEKDIVVKSKTGSGKTASYAI
PICQLVDWEENKPQALVITPTRELAIQVKEDFFNIGRFKRIKAAAIYGKSPFYDQEKELK
QKTHIVVGTPGRIIDHIEKGTFDTSKIKYLIIDEADEMLNMGFVEQIETIIKSIPKERVT
MLLSATMPKDIETLCNKYMKEPIHIEIEEQNKSVDNICQERYNVNESHKIDLLRDITILE
NPDSCMIFCNTKQKVDEVYKELAKLQYDCRKIHGGMEQSDRLRVMNNFKLGYFRYLIATD
VAARGIDIDNITHVINYDIPEDKESYVHRIGRTGRAGKMGRAITFVTQNESKFLNDIHEY
IGKEILLKERPKVETVNNLKEEFTLKMNTRPEIKETKGAKLSKEIMKLHINAGKKTKMRA
VDIVGTLCNIEGMTKDDIGIINIVDISTFVEILNNKGERVFQQLQKTPIKGRLRTVSKVD
I
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaacaaattttaatgattataagttatgcaatgagctattaaaagcaattagt
atgttgaatttcaatgagttaacaaaagttcaagaacaggttataccgattgcgttagaa
gaaaaggatatagtagtaaagtctaaaactggaagtggtaagactgcatcatatgctatt
cctatttgccaattagtggattgggaagaaaataaacctcaagcattagtgattacacca
acaagagaacttgctatccaagtcaaagaggatttttttaatataggtagatttaaaaga
attaaagcagctgcaatttatgggaagtcacctttctatgatcaagaaaaggaacttaaa
caaaaaacacatatagtagttgggacacctggtcgtattatagatcatatagaaaaaggt
acatttgatacatcaaaaataaagtatcttataatagatgaagctgatgaaatgcttaat
atgggatttgtagagcaaatagaaacaataataaaaagtataccaaaagaacgtgtgacc
atgttattgtcagccacaatgccaaaagacatagagactttatgcaataaatatatgaaa
gagcctatacatattgaaatagaggagcaaaataaatctgtagataatatatgtcaagaa
agatataacgtaaatgaatcacataaaatagatctcttaagagatataactatattagaa
aatccagatagttgtatgatattctgcaatacaaaacaaaaggtagatgaagtttataaa
gaattggcaaagctccagtatgattgcagaaaaatacatggtggaatggaacaaagtgat
agattaagagtaatgaataattttaagctgggttattttagatatctaatagctacagat
gttgcagctagagggatagatatagataatatcacccatgtaattaattatgatatacca
gaagacaaggaaagttatgtacataggataggaagaactggacgtgcaggcaagatgggt
agagcaattacttttgtaacacaaaatgaaagtaagtttttaaatgatatacatgaatat
attggtaaagaaattcttttgaaggaaagacctaaagtggaaactgtaaataatcttaaa
gaagaatttactttaaaaatgaatacaagacccgaaattaaagaaacaaagggtgcgaag
ctaagtaaagagattatgaaattgcatattaatgcaggtaagaaaacaaagatgagggca
gttgatattgtaggcacgctttgcaatattgaaggcatgacaaaagacgatataggaatc
atcaatatagttgatatatctacctttgtagaaatattaaataataaaggagagagggtg
ttccagcagttacaaaaaacacctatcaaaggcaggcttcgtaccgtaagtaaagttgat
atataa
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