Clostridium beijerinckii NCIMB 14988: LF65_05010
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Entry
LF65_05010 CDS
T04773
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cbei
Clostridium beijerinckii NCIMB 14988
Pathway
cbei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF65_05010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbei03019
]
LF65_05010
03400 DNA repair and recombination proteins [BR:
cbei03400
]
LF65_05010
Enzymes [BR:
cbei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF65_05010
Messenger RNA biogenesis [BR:
cbei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF65_05010
DNA repair and recombination proteins [BR:
cbei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF65_05010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Rhodanese
HHH
Motif
Other DBs
NCBI-ProteinID:
AJH01539
UniProt:
A0A0B5QX27
LinkDB
All DBs
Position
complement(5518773..5520554)
Genome browser
AA seq
593 aa
AA seq
DB search
MDTKQKIFYALKKYYGFDTLRRGQFEIINSILNGVDTFCLMPTGAGKSICYQIPAIIMQG
VTIVISPLISLMKDQVDNLVGAGIKAAYINSTQNMDTIRSILIEASMGEYKIIYISPERL
ESKIFRELIKDLHICQIAIDEAHCVSQWGHDFRQSYLGISDFYKSLKVKPIISAFTATAT
SEVREDSIKLLGLEKPYIYKGDINRENLSLNILKEVDKIETVKDIIRKNEGESGIVYCAS
RNEVDNLYYYLRDLGFNVGKYHGGLKDEEKERFQEEFLYENLDVIIATNAFGMGIDKSNI
RFIVHFTFPQNLESYYQEIGRGGRDGENCDCYLFYCEEDISRVEYIINRSSSMNRREIQL
RKFQFMIDYCNLKECYRKYILNYFGNDRKLNYCNKCSNCLNDDELKDFTKESQMILSTVF
RTKEQYGISVLVDILKGFKGPKIIQNNLDKVTTYGIMKEYGSTFIKELIKKLLDDGYVDL
KEGTYSMLKLNSRSIRVLKSKESVVFKILDSREPIINKELFEALKSWRKDRAYKDKIKPY
IIFSDTSLIAISNSRPRTLDELLEIRGVGTKKIEAYGGELLNIIRMFAQKEAN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggatactaaacaaaagatattttatgctttaaaaaaatactacggatttgatactcta
agaagagggcagttcgagattataaatagtattttaaatggtgtggatactttttgtctt
atgcctacaggggcagggaaatctatttgttaccagattccagctataattatgcaaggt
gtaactatagttatatctcctttaatatcgcttatgaaggaccaagtggacaatctagtt
ggggctgggattaaagccgcatatataaatagtactcagaatatggacactataagaagt
atattaattgaagcatctatgggggagtacaagataatatatatatcaccagaaagatta
gaatccaaaatatttagagaattgattaaagatcttcatatatgccaaattgctatagat
gaagcacattgtgtatctcagtgggggcatgattttaggcagagttatttaggaatatca
gatttttataaaagtcttaaagttaaacctataatatcagcgttcactgcaacagcaaca
agtgaagttagagaagactcaatcaaattattggggttagagaaaccttatatatataaa
ggcgatattaatagggaaaatcttagtcttaatatacttaaggaagtagataagattgaa
actgttaaggatataattagaaaaaatgaaggtgaatctggtattgtatactgcgcgtca
agaaatgaagtagataatttatattattatttaagggacctaggatttaatgttggtaag
tatcatggtggactcaaagatgaagagaaagaaagatttcaagaagagtttttatatgag
aatttagatgtaattattgcgactaatgcatttggaatgggaatagataagtcaaatatt
agattcatagtacattttacttttcctcaaaacttagaatcgtattatcaagagatagga
agaggaggaagagatggagagaactgtgactgttacttattttattgtgaagaagatata
agtagagtggaatatattataaatagaagttcttccatgaatagaagagaaattcagctt
agaaagttccaatttatgattgattattgtaatttaaaggaatgctatagaaaatatata
ttgaattactttggaaatgatcggaagctaaattactgtaataaatgcagtaactgctta
aacgatgatgaattaaaagattttacaaaagaaagtcagatgattttgtccacagttttt
agaacaaaagaacagtatggaatatcagttcttgttgatattttaaaaggtttcaaggga
cctaaaataatacaaaataatttagataaagttacaacatacggaataatgaaggaatat
ggaagtacttttataaaagagttgataaaaaaattactagatgatggatacgttgatttg
aaagaaggcacatattcaatgttaaaacttaattctagatcaattagagttttaaaaagc
aaggaatcagttgtatttaagatattagatagcagggagcctataataaataaagagcta
tttgaagctttaaaatcttggagaaaagatagggcatataaggataaaataaagccttat
ataatattctcagatacaagcttgattgcaatatctaatagtagacctagaacattagat
gaattgttggagatcagaggagttggaacaaaaaaaattgaagcttatgggggagagtta
ttaaatataataagaatgtttgcgcaaaaagaagctaattaa
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