Chryseobacterium bernardetii: EG339_04590
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Entry
EG339_04590 CDS
T06826
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cben
Chryseobacterium bernardetii
Brite
KEGG Orthology (KO) [BR:
cben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cben03016
]
EG339_04590
Enzymes [BR:
cben01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EG339_04590
Transfer RNA biogenesis [BR:
cben03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EG339_04590
Prokaryotic type
tRNA splicing ligases
EG339_04590
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZB27542
UniProt:
A0A3G6TE93
LinkDB
All DBs
Position
complement(963793..965184)
Genome browser
AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKLGYPNNQSINVALEVMKRNFATKNIQYVKSLLKEILINPEQFEKDLT
FGQIAETLLSSKKTEKRMLNSQRADFQIFGNNISEEAKNQLYTALKLPVSVQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLNGAKDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDLIPVLRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAVEQCPLPKEAQQFAWLDLSTHLGLEYWTA
MSLAGDYAAACHDDIHRRLVKAVGGRVKARIENHHNFAWKETHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDSLNSASHGAGRAHSRGECRSLFTQNDIKKELKLKDV
TLMGGNAEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatccaaacaatcaa
agcattaatgtagctctggaagtaatgaaaagaaattttgcaactaaaaatatccagtat
gtaaaatctcttctcaaagaaattctgatcaatccggaacagttcgaaaaagatttaacc
ttcggacagattgcagaaaccttgctttcatccaaaaaaacagaaaaaagaatgctgaat
tcgcaacgtgcagactttcagatcttcggaaataatatctcggaagaagcaaaaaatcag
ctgtacacggcattgaagcttccggtttctgttcaaggcgcactaatgcctgatgctcac
agcggatatggacttccgattggaggtgttctggcggtagaaaatgcagtgattccctac
ggagtaggaatggatatcggctgtagaatgagccttagtattttggatacaccggtatca
tatctgaacggggcaaaggataaatatgaaaaagcccttgcagaacatacaaagtttgga
atgtatgagactcataaatctcatatagatcacgaaatctttgacagagatacatttgac
cttattcctgtcctaagaaggttaaaaggaaaagccatcaaacagatgggatcctcaggt
ggaggaaatcattttgtggaatttggagaagtggaaatcactgaggaagatgaacaaatt
ggcttaccaaaaggaaaataccttgggattctttcacacagcggatctcgtgggttgggc
gctgaaattgcccagtattattcaagagtagcagtagaacaatgtccactgcctaaagaa
gcacagcagtttgcatggctggacttgagtactcatcttggtttggaatactggacagca
atgagccttgcaggagattatgctgcagcctgtcatgatgatatccacagaaggctggta
aaggcagtaggaggaagagttaaagccagaatcgagaatcatcacaacttcgcctggaaa
gaaactcacaacggaaaagaagtgattgttcacagaaaaggagccactccggccaatgaa
aatgagttgggaatgatcccgggatctatgacagccaaaggatttattgtccgtggaaaa
ggaaatcccgattcactgaactccgcttctcatggagcgggtagagcacactcaagagga
gaatgcagaagccttttcactcagaacgacatcaagaaagaactaaaacttaaggatgtt
acactcatgggtggaaatgcagaagaagcaccaatggcttataaagatattcatgaagtc
atgaatgcacaaagtgaattggtagatattctgggaacattccagccgagaattgtaagg
atggacaggtaa
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