Chryseobacterium bernardetii: EG339_06950
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Entry
EG339_06950 CDS
T06826
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cben
Chryseobacterium bernardetii
Pathway
cben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG339_06950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cben03021
]
EG339_06950
03019 Messenger RNA biogenesis [BR:
cben03019
]
EG339_06950
Transcription machinery [BR:
cben03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EG339_06950
Messenger RNA biogenesis [BR:
cben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EG339_06950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Rho_N
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AZB24361
UniProt:
A0A3G6T4S6
LinkDB
All DBs
Position
1481815..1483635
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AA seq
606 aa
AA seq
DB search
MFNIETLRSKSVTELTKILKDLGVKVARNSNENDKIFAILDFQASNPKVAKDYFNATETS
ANTEEAPAEKTAKAPIKKAAPKKAPAKPKATAKAPAEPKVEENVEEITPVAEEIKAEEPK
TETVAATASEDASAANPAKKKRKRVSASTGNAETSQEKTEAPKNTEPQEPAQAEEKPHNP
QQPQANRPQKGHNHPQNGGNQNKNQNQHQHQNPNQNQNRHSEKAEEQQDHKKEFNFDGMV
SIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFGLKTGDTVKGIVRLPKEGEK
YFSLLRPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLAGSGSTVSTRIVDLFAPIGKGQ
RAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERPEEVTDMERSVNAEVIASTF
DEAAEKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKVLSGGVDAN
ALHRPKRFFGAARKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANR
RIYPAIDLVASSTRRDDLLLDEVTSQRMWILRKYLSEMNPVEAMEFVDKNIKGTLNNEEF
LMSMNK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaactgactaaaatcttaaag
gatttgggcgttaaagttgcaagaaacagcaatgaaaatgacaaaatctttgcaattctt
gactttcaggcttccaaccctaaagtagcaaaagattatttcaacgccacggaaaccagc
gccaatactgaagaagctccagcagaaaaaactgcaaaggctcctataaagaaagctgct
ccaaagaaagccccggcaaagcctaaggcaactgcaaaagctccggcagaaccaaaagta
gaggaaaacgtagaagaaataacgccggttgccgaagaaataaaagcagaagagcctaag
actgaaacagtagcagcaacagccagcgaagacgcatctgcagctaacccggctaagaaa
aaaaggaaaagagtttctgccagtacaggaaatgcagaaacctcccaggagaaaacagaa
gctcctaaaaacacagaacctcaagagcctgcccaggcggaagaaaagcctcacaaccct
caacaacctcaggctaacagacctcaaaagggacacaaccatccacagaacggtggaaac
caaaataaaaatcaaaatcaacaccaacaccagaatcctaaccaaaatcagaacagacat
tctgaaaaggcagaggaacagcaagaccataaaaaagaattcaactttgatggaatggtg
agcattgaaggggtgttggagattttaccagacaactacggatttttacgttcttcagac
tttagctatatttcttctcctgatgatgtgtatgtttctacagcacagatcagaaatttc
gggttgaaaaccggagataccgttaaaggaattgtaagattacctaaagaaggagaaaaa
tatttttcattattaagacctacggaagttaacgggcgtgatcttgcatttatcaaagac
cgtgtagcttttgaatatctcactccacttttccctgaagaaaaattcaacctggcagga
agcggatctacagtttctacaagaattgttgacctgtttgcacctattggtaaggggcaa
agagcaatgatcgtagcacagcctaaaacaggtaaaacgatgttgcttaaggatattgct
aattctatcgctgctaaccaccctgaagtatatatgatggtgcttctgatagacgaacgt
ccggaagaggttactgatatggaaagaagtgtaaatgcagaggtaattgcttctacattt
gacgaggccgctgaaaaacatgtaaaagtggcaaacctggttttggctaaagctcagaga
atggtagagtgtgggcatgatgttgtgattctgttagactctatcaccagattggcaaga
gcttacaacactgtaacgccggcatccgggaaggttctttccggtggggtggatgcgaat
gcacttcacaggccgaagagattcttcggagcagcaagaaaaattgaaggtggaggatct
ctaacaattattgctacggcattaattgatacaggttctaaaatggacgaagtaatcttt
gaagaattcaaaggtacaggtaacatggaacttcagttagacagaaaaattgctaacaga
agaatttatcctgctattgatcttgttgcatccagcacacgtagagacgatcttctgttg
gatgaagtaacttcacaaagaatgtggattctgagaaaatacctttctgaaatgaatcct
gtagaagctatggaatttgtagataagaacattaaaggaactcttaacaatgaggaattc
ctaatgtctatgaataaataa
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