Chryseobacterium bernardetii: EG339_11775
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Entry
EG339_11775 CDS
T06826
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cben
Chryseobacterium bernardetii
Pathway
cben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EG339_11775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cben03019
]
EG339_11775
Enzymes [BR:
cben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EG339_11775
Messenger RNA biogenesis [BR:
cben03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EG339_11775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UvrD-helicase
Flavi_DEAD
HEM4
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZB25208
UniProt:
A0A3G6T7P8
LinkDB
All DBs
Position
complement(2537759..2539072)
Genome browser
AA seq
437 aa
AA seq
DB search
MNFTDLNLIEPIAKAIQEQGYTTPTPIQERSIPEILQGRDFLGCAQTGTGKTAAFAIPIL
QNLSKNKIPNKNIKALILTPTRELAIQIEENIHAYGKYLPLKELVIFGGVKQGNQEAALK
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQKRQT
LFFSATMPGEIQKLANSILNNPVKVEVTPVSSTADTIQQSVYFVEKENKLNLLSHILQND
ISDSVLVFARTKHGADKIARKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNTEKL
IGKKIPVIKNHPFHTDDLVVQKRDSNNKPVPAGAERSQKPSNSSRPNNNRNKKKPKPSET
PSTGFKKPKNKNFTRKK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagaacctattgccaaggcaattcaggaacaggga
tataccactccaacacccattcaggaaagatctattcctgaaattttacaaggcagagac
tttttaggctgtgcacaaaccggaacaggaaaaacagcagcttttgctattcccatactg
cagaacctatctaaaaataagatacctaacaaaaatattaaagctttaatccttacgcct
acaagagaattggctattcagattgaagaaaatattcatgcttatggtaaatatcttccc
ttaaaagaacttgttattttcggtggggttaaacagggaaatcaggaagctgcactaaaa
aaaggggttgacattttggttgccacaccaggaaggcttcttgacttcattgcccaaggc
atcatcagcttaaaaaatcttgaaatatttgttcttgatgaagcagacaggatgcttgat
atgggatttgtgcatgatgtaaaaagaatcatcaagcttttgccacaaaaaaggcagaca
ttattcttctctgcaacgatgccgggagaaatccagaaacttgctaattctatcctgaac
aatcctgtaaaggtagaagttacgcctgtgtcctctaccgctgatactattcagcaatct
gtttattttgtagaaaaagaaaacaaactgaatctgttatcccatattcttcaaaatgat
atttcagattctgtattggtatttgccagaacaaaacacggtgccgataaaattgccaga
aagcttcagaaagataatatctctgcagaagctattcatggaaacaaatctcagaatgca
agacagaatgcccttaataactttaaatcaggaaaaacaagggttcttgtagctactgat
attgctgcaagaggaattgacattgatgaactaaaatttgtcatcaattttgaactgtct
gatgtttctgaaacttatgtacacagaataggaagaacaggcagagccggcgcagaagga
acttccatttcttttgttgacggattggatcttcttaatctgaagaatacagaaaagctg
attggaaagaaaatccctgtgatcaaaaaccatccgttccatacagatgatcttgtagta
cagaaaagagattctaataataaaccggttcctgcaggtgccgagagatcacagaaaccg
agtaacagctccagacctaataacaacagaaacaaaaagaaaccaaaaccttctgaaact
ccttctactggatttaaaaagccaaagaataagaattttaccagaaaaaaataa
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